miRNA display CGI


Results 81 - 100 of 969 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6481 5' -64.2 NC_001847.1 + 71109 0.66 0.522303
Target:  5'- gCCCAggcgugaaccGCGGGcaaGC-CCGuCCCGCCGCc -3'
miRNA:   3'- -GGGU----------CGUCCuacCGcGGC-GGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 107034 0.66 0.522303
Target:  5'- gCCGGCcucGGuccUGGCcccgagggcaccGCCGCCCcCCGCc -3'
miRNA:   3'- gGGUCGu--CCu--ACCG------------CGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 12958 0.66 0.522303
Target:  5'- -gCGGCGGGccgGGgGUgGCCCgGUCGCu -3'
miRNA:   3'- ggGUCGUCCua-CCgCGgCGGG-CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 66692 0.66 0.522303
Target:  5'- cCCCGGCc-GcgGGCGCgGaCCUcugcgGCCGCu -3'
miRNA:   3'- -GGGUCGucCuaCCGCGgC-GGG-----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 1161 0.66 0.522303
Target:  5'- cUCCGGCAGc---GCgGCCGCgcagaaggccaCCGCCGCg -3'
miRNA:   3'- -GGGUCGUCcuacCG-CGGCG-----------GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 4221 0.66 0.522303
Target:  5'- gCCGGCcucGGuccUGGCcccgagggcaccGCCGCCCcCCGCc -3'
miRNA:   3'- gGGUCGu--CCu--ACCG------------CGGCGGGcGGCG- -5'
6481 5' -64.2 NC_001847.1 + 53179 0.66 0.522303
Target:  5'- gCCC-GCGuGAUGaGCG-CGCCCGCgGUg -3'
miRNA:   3'- -GGGuCGUcCUAC-CGCgGCGGGCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 103974 0.66 0.522303
Target:  5'- cUCCGGCAGc---GCgGCCGCgcagaaggccaCCGCCGCg -3'
miRNA:   3'- -GGGUCGUCcuacCG-CGGCG-----------GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 121201 0.66 0.522303
Target:  5'- aCUugcGCGGGgcGGCcCC-CCUGCCGCg -3'
miRNA:   3'- gGGu--CGUCCuaCCGcGGcGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 67918 0.66 0.522303
Target:  5'- -aCAGCucac-GGCGUucgaccgcgCGCCCGCCGCu -3'
miRNA:   3'- ggGUCGuccuaCCGCG---------GCGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 66504 0.66 0.522303
Target:  5'- gCCAGCGGcgcGGUGgaggcGCGCCGCCUuGCgGUc -3'
miRNA:   3'- gGGUCGUC---CUAC-----CGCGGCGGG-CGgCG- -5'
6481 5' -64.2 NC_001847.1 + 76654 0.66 0.522303
Target:  5'- gCCCgagGGCGGGGagGGCGCCuuuuucgaCCCGUucaCGCg -3'
miRNA:   3'- -GGG---UCGUCCUa-CCGCGGc-------GGGCG---GCG- -5'
6481 5' -64.2 NC_001847.1 + 48931 0.66 0.522303
Target:  5'- gCCUGGCGGGcgcaGGCGCgcgacuggacCGCCCccgguGCCGUc -3'
miRNA:   3'- -GGGUCGUCCua--CCGCG----------GCGGG-----CGGCG- -5'
6481 5' -64.2 NC_001847.1 + 78233 0.66 0.522303
Target:  5'- cCCgGGCGGGuucgcccUGGagGCCGacgUCGCCGCg -3'
miRNA:   3'- -GGgUCGUCCu------ACCg-CGGCg--GGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 71893 0.66 0.522303
Target:  5'- ---cGCGGuGAUGGCGCUGCa-GCgGCg -3'
miRNA:   3'- ggguCGUC-CUACCGCGGCGggCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 51946 0.66 0.522303
Target:  5'- gCCCaAGCucGucUGcGCGCCcCCCGCCGUc -3'
miRNA:   3'- -GGG-UCGucCu-AC-CGCGGcGGGCGGCG- -5'
6481 5' -64.2 NC_001847.1 + 63735 0.66 0.522303
Target:  5'- cCCCGGCc-GAgcaacaGCGCCGCCUgGCgGCg -3'
miRNA:   3'- -GGGUCGucCUac----CGCGGCGGG-CGgCG- -5'
6481 5' -64.2 NC_001847.1 + 121821 0.66 0.522303
Target:  5'- gCCAGCAGGuacagcucGGCcgacuGCaGCCCGgCGCc -3'
miRNA:   3'- gGGUCGUCCua------CCG-----CGgCGGGCgGCG- -5'
6481 5' -64.2 NC_001847.1 + 53683 0.66 0.521371
Target:  5'- gCCAGCcgcaaGAUGugcgcgcgcgagcGCGCCGCCgGCgGCu -3'
miRNA:   3'- gGGUCGuc---CUAC-------------CGCGGCGGgCGgCG- -5'
6481 5' -64.2 NC_001847.1 + 87844 0.66 0.521371
Target:  5'- gCCGGCGGGcgugAUGGCccgcgggccugugGUCGCUgugGCCGCg -3'
miRNA:   3'- gGGUCGUCC----UACCG-------------CGGCGGg--CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.