miRNA display CGI


Results 61 - 80 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 127724 0.67 0.968447
Target:  5'- --------aCGCCCCCCCCCc----- -3'
miRNA:   3'- gcuuuaaagGCGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 39469 0.67 0.968447
Target:  5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5'
6482 3' -51.2 NC_001847.1 + 39415 0.67 0.968447
Target:  5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5'
6482 3' -51.2 NC_001847.1 + 39388 0.67 0.968447
Target:  5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5'
6482 3' -51.2 NC_001847.1 + 39442 0.67 0.968447
Target:  5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5'
6482 3' -51.2 NC_001847.1 + 40269 0.67 0.968447
Target:  5'- gCGGAuUUgcgagCUGCCCgcgCCCCCCAAGGu- -3'
miRNA:   3'- -GCUUuAAa----GGCGGG---GGGGGGUUUUug -5'
6482 3' -51.2 NC_001847.1 + 50416 0.67 0.968447
Target:  5'- -cAGAUcgCCGCCCCCUacgcugCCGGGAACc -3'
miRNA:   3'- gcUUUAaaGGCGGGGGGg-----GGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 80683 0.67 0.971499
Target:  5'- -------cCCGCCCUCCUCCucGGGCu -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuUUUG- -5'
6482 3' -51.2 NC_001847.1 + 26527 0.67 0.971499
Target:  5'- -------cCCGCCgUCCCCCGGAGcACg -3'
miRNA:   3'- gcuuuaaaGGCGGgGGGGGGUUUU-UG- -5'
6482 3' -51.2 NC_001847.1 + 98305 0.67 0.971499
Target:  5'- cCGAGcgcacgUCCGCCagCCCCCAGucGGCg -3'
miRNA:   3'- -GCUUuaa---AGGCGGggGGGGGUUu-UUG- -5'
6482 3' -51.2 NC_001847.1 + 34451 0.67 0.974059
Target:  5'- gGAAGUggCCGCCUgggugcgagaaagCCUCCUggGGACc -3'
miRNA:   3'- gCUUUAaaGGCGGG-------------GGGGGGuuUUUG- -5'
6482 3' -51.2 NC_001847.1 + 54295 0.67 0.974333
Target:  5'- uCGAcgcgcgCCGCCgcccggaucugCCCCCCCAAGucGCg -3'
miRNA:   3'- -GCUuuaaa-GGCGG-----------GGGGGGGUUUu-UG- -5'
6482 3' -51.2 NC_001847.1 + 129880 0.67 0.974333
Target:  5'- uGGAcUUUCgccucaagCGCCCCCUCCCccgcGGAGACc -3'
miRNA:   3'- gCUUuAAAG--------GCGGGGGGGGG----UUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 23357 0.67 0.974333
Target:  5'- ------gUCUGCCCgCCCCCGGGc-- -3'
miRNA:   3'- gcuuuaaAGGCGGGgGGGGGUUUuug -5'
6482 3' -51.2 NC_001847.1 + 2408 0.67 0.974333
Target:  5'- aGAG----UCGUCCUCCCCCGAGGGg -3'
miRNA:   3'- gCUUuaaaGGCGGGGGGGGGUUUUUg -5'
6482 3' -51.2 NC_001847.1 + 126170 0.67 0.974333
Target:  5'- ------gUCUGCCCgCCCCCGGGc-- -3'
miRNA:   3'- gcuuuaaAGGCGGGgGGGGGUUUuug -5'
6482 3' -51.2 NC_001847.1 + 72206 0.67 0.974333
Target:  5'- cCGGA---UCUGCCCCCCgaCgAGGAGCc -3'
miRNA:   3'- -GCUUuaaAGGCGGGGGGg-GgUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 105221 0.67 0.974333
Target:  5'- aGAG----UCGUCCUCCCCCGAGGGg -3'
miRNA:   3'- gCUUuaaaGGCGGGGGGGGGUUUUUg -5'
6482 3' -51.2 NC_001847.1 + 97131 0.67 0.975407
Target:  5'- gCGuguagUCCGCCaCCguggccacccgggccUCCCCAAAGACa -3'
miRNA:   3'- -GCuuuaaAGGCGG-GG---------------GGGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 73827 0.67 0.976703
Target:  5'- -------cCCGCCCCgCCCCGcgcacccgcgcaaAAAACg -3'
miRNA:   3'- gcuuuaaaGGCGGGGgGGGGU-------------UUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.