Results 41 - 60 of 133 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 110351 | 0.68 | 0.952678 |
Target: 5'- -uGAGUUUCUauucguccuuuuguGCCCCCCCCCc----- -3' miRNA: 3'- gcUUUAAAGG--------------CGGGGGGGGGuuuuug -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 78781 | 0.68 | 0.953923 |
Target: 5'- cCGAGGUcgugCCGCCCgCgCCCGcGGAGCa -3' miRNA: 3'- -GCUUUAaa--GGCGGGgGgGGGU-UUUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 81277 | 0.68 | 0.957913 |
Target: 5'- aGAGAcggCCGCCCCacagcaCCCCCu--GACc -3' miRNA: 3'- gCUUUaaaGGCGGGG------GGGGGuuuUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 129622 | 0.68 | 0.957913 |
Target: 5'- aCGAGcgUcgCCGCCCUagaCCCCGAc--- -3' miRNA: 3'- -GCUUuaAa-GGCGGGGg--GGGGUUuuug -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 63683 | 0.68 | 0.957913 |
Target: 5'- -------gCCGCCaUgCCCCCGGAAGCg -3' miRNA: 3'- gcuuuaaaGGCGG-GgGGGGGUUUUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 126439 | 0.68 | 0.961297 |
Target: 5'- uGAAggUUCugcagugCGCCCCCCUCCucuAGCc -3' miRNA: 3'- gCUUuaAAG-------GCGGGGGGGGGuuuUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 23626 | 0.68 | 0.961297 |
Target: 5'- uGAAggUUCugcagugCGCCCCCCUCCucuAGCc -3' miRNA: 3'- gCUUuaAAG-------GCGGGGGGGGGuuuUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 109784 | 0.68 | 0.961661 |
Target: 5'- -------gCCGCCCCCUgCCAucAGCu -3' miRNA: 3'- gcuuuaaaGGCGGGGGGgGGUuuUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 55561 | 0.68 | 0.961661 |
Target: 5'- --------gCGCCCCCgCCCGAAGAg -3' miRNA: 3'- gcuuuaaagGCGGGGGgGGGUUUUUg -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 123910 | 0.68 | 0.96517 |
Target: 5'- cCGAAAacggCgGCUCCUCCaCCAGAGGCc -3' miRNA: 3'- -GCUUUaaa-GgCGGGGGGG-GGUUUUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 88197 | 0.68 | 0.96517 |
Target: 5'- gCGggGcUUUCUGCUgCCggacaCCCAAAAGCg -3' miRNA: 3'- -GCuuU-AAAGGCGGgGGg----GGGUUUUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 96650 | 0.68 | 0.96517 |
Target: 5'- -------aCCGCgCCgCCCCCCGGcGACg -3' miRNA: 3'- gcuuuaaaGGCG-GG-GGGGGGUUuUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 108672 | 0.68 | 0.96517 |
Target: 5'- -cGAGUUUCCGCUCCCCgCgCuggcGAACa -3' miRNA: 3'- gcUUUAAAGGCGGGGGGgG-Guu--UUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 123319 | 0.68 | 0.96517 |
Target: 5'- --------gCGCCCCCCCCCccgcGCg -3' miRNA: 3'- gcuuuaaagGCGGGGGGGGGuuuuUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 51195 | 0.68 | 0.96517 |
Target: 5'- ------cUCCGCCCCCggCCCCGcgcGCa -3' miRNA: 3'- gcuuuaaAGGCGGGGG--GGGGUuuuUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 102359 | 0.67 | 0.96813 |
Target: 5'- ------gUCCGCCCccggcccuCCCCCCAcagggaucuccucGAAGCa -3' miRNA: 3'- gcuuuaaAGGCGGG--------GGGGGGU-------------UUUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 39388 | 0.67 | 0.968447 |
Target: 5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3' miRNA: 3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 24911 | 0.67 | 0.968447 |
Target: 5'- --------aCGCCCCCCCCCc----- -3' miRNA: 3'- gcuuuaaagGCGGGGGGGGGuuuuug -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 39415 | 0.67 | 0.968447 |
Target: 5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3' miRNA: 3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 9053 | 0.67 | 0.968447 |
Target: 5'- ------cUCCGCCCCCCCgugcagcgcuCCAuu-GCa -3' miRNA: 3'- gcuuuaaAGGCGGGGGGG----------GGUuuuUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home