miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 107222 0.7 0.912843
Target:  5'- cCGAGAcggCCGCCCUggCCUCCGcAAGCg -3'
miRNA:   3'- -GCUUUaaaGGCGGGG--GGGGGUuUUUG- -5'
6482 3' -51.2 NC_001847.1 + 100722 0.7 0.912843
Target:  5'- cCGAAGUacuucUUCCGCCgCCCCCagcgccGCg -3'
miRNA:   3'- -GCUUUA-----AAGGCGGgGGGGGguuuu-UG- -5'
6482 3' -51.2 NC_001847.1 + 18095 0.7 0.912843
Target:  5'- gCGAGGcUUCCGCCuccucggcgagCCCCCgCCGGgcAGACa -3'
miRNA:   3'- -GCUUUaAAGGCGG-----------GGGGG-GGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 17811 0.7 0.918883
Target:  5'- gCGggGggcgaggCCGCCCCCCgCCGc---- -3'
miRNA:   3'- -GCuuUaaa----GGCGGGGGGgGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 117263 0.7 0.918883
Target:  5'- -------gCCGCCcgCCCCgCCCGAGGACg -3'
miRNA:   3'- gcuuuaaaGGCGG--GGGG-GGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 94327 0.69 0.923529
Target:  5'- cCGGGuggugcaGCUCCCCCCCGAAuACg -3'
miRNA:   3'- -GCUUuaaagg-CGGGGGGGGGUUUuUG- -5'
6482 3' -51.2 NC_001847.1 + 78311 0.69 0.924665
Target:  5'- gCGGcugggCCGCCCCCuCCCCGc---- -3'
miRNA:   3'- -GCUuuaaaGGCGGGGG-GGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 113172 0.69 0.930186
Target:  5'- gCGAGGgggCCGCcgccgaaagCCCCCCCCGGu--- -3'
miRNA:   3'- -GCUUUaaaGGCG---------GGGGGGGGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 92191 0.69 0.930186
Target:  5'- -------cCCGCCCCCCCCgCGcgcGGCg -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGG-GUuu-UUG- -5'
6482 3' -51.2 NC_001847.1 + 10359 0.69 0.930186
Target:  5'- gCGAGGgggCCGCcgccgaaagCCCCCCCCGGu--- -3'
miRNA:   3'- -GCUUUaaaGGCG---------GGGGGGGGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 103001 0.69 0.935447
Target:  5'- cCGggGcccCCGCCCCCgCCCCc----- -3'
miRNA:   3'- -GCuuUaaaGGCGGGGG-GGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 97984 0.69 0.935447
Target:  5'- aCGAGGUg-CCGCUUCCcggccgCCCCAAAGGCc -3'
miRNA:   3'- -GCUUUAaaGGCGGGGG------GGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 188 0.69 0.935447
Target:  5'- cCGggGcccCCGCCCCCgCCCCc----- -3'
miRNA:   3'- -GCuuUaaaGGCGGGGG-GGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 4283 0.69 0.94045
Target:  5'- uGAGGggcgCCGCCCCCgCCUCGGc--- -3'
miRNA:   3'- gCUUUaaa-GGCGGGGG-GGGGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 55115 0.69 0.94045
Target:  5'- gCGAugacgCCGaCCCCCCCCGcgccAAACg -3'
miRNA:   3'- -GCUuuaaaGGCgGGGGGGGGUu---UUUG- -5'
6482 3' -51.2 NC_001847.1 + 61923 0.69 0.94045
Target:  5'- -------gCCGCCCCCCUCCucc-GCg -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 107096 0.69 0.94045
Target:  5'- uGAGGggcgCCGCCCCCgCCUCGGc--- -3'
miRNA:   3'- gCUUUaaa-GGCGGGGG-GGGGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 82177 0.68 0.949247
Target:  5'- -----cUUCCcCCCCCCCuucacggCCAAAGACg -3'
miRNA:   3'- gcuuuaAAGGcGGGGGGG-------GGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 103055 0.68 0.949685
Target:  5'- ---cGUUUCCcCCCuCCCCCCAAu--- -3'
miRNA:   3'- gcuuUAAAGGcGGG-GGGGGGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 7538 0.68 0.952678
Target:  5'- -uGAGUUUCUauucguccuuuuguGCCCCCCCCCc----- -3'
miRNA:   3'- gcUUUAAAGG--------------CGGGGGGGGGuuuuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.