miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 23720 0.66 0.988748
Target:  5'- ------cUCC-CCCCgCCCCCGGccGAGCg -3'
miRNA:   3'- gcuuuaaAGGcGGGG-GGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 23832 0.66 0.99014
Target:  5'- aGggGg--CCcacguaagggGCCCCgCCCCCGGccGAGCg -3'
miRNA:   3'- gCuuUaaaGG----------CGGGG-GGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 24911 0.67 0.968447
Target:  5'- --------aCGCCCCCCCCCc----- -3'
miRNA:   3'- gcuuuaaagGCGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 24921 0.66 0.987208
Target:  5'- -------nCC-CCCCCCCCCAuAAAg -3'
miRNA:   3'- gcuuuaaaGGcGGGGGGGGGUuUUUg -5'
6482 3' -51.2 NC_001847.1 + 25491 0.74 0.714081
Target:  5'- -------gCCGCCCCCCCCCcc-AACu -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 26527 0.67 0.971499
Target:  5'- -------cCCGCCgUCCCCCGGAGcACg -3'
miRNA:   3'- gcuuuaaaGGCGGgGGGGGGUUUU-UG- -5'
6482 3' -51.2 NC_001847.1 + 26849 0.66 0.981603
Target:  5'- aCGAGAgcagUCCGCCCaggcaCCCGAGuGCc -3'
miRNA:   3'- -GCUUUaa--AGGCGGGggg--GGGUUUuUG- -5'
6482 3' -51.2 NC_001847.1 + 27057 0.66 0.98551
Target:  5'- aGAGAggcCCGCagCCCCCCgGGcgGCa -3'
miRNA:   3'- gCUUUaaaGGCGg-GGGGGGgUUuuUG- -5'
6482 3' -51.2 NC_001847.1 + 27474 0.73 0.78432
Target:  5'- -------gCCGCCCCCCCCCc----- -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 29779 0.67 0.976956
Target:  5'- aGAGGg--CCGCCCCggCCCGGcgGCg -3'
miRNA:   3'- gCUUUaaaGGCGGGGggGGGUUuuUG- -5'
6482 3' -51.2 NC_001847.1 + 32282 1.11 0.005043
Target:  5'- cCGAAAUUUCCGCCCCCCCCCAAAAACa -3'
miRNA:   3'- -GCUUUAAAGGCGGGGGGGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 32476 0.66 0.98551
Target:  5'- -------cCCGCCCCCCCgCCcuc-GCg -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGG-GGuuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 33019 0.71 0.878833
Target:  5'- gCGGAGUgccgCCGCCCUCuCCgCCGAGcugGACg -3'
miRNA:   3'- -GCUUUAaa--GGCGGGGG-GG-GGUUU---UUG- -5'
6482 3' -51.2 NC_001847.1 + 33700 0.72 0.83888
Target:  5'- gCGGcAGUUUCCGCgCCCCCCagcucucGGAGCc -3'
miRNA:   3'- -GCU-UUAAAGGCGgGGGGGGgu-----UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 34047 0.66 0.99014
Target:  5'- gCGAAcgcgcCCGCCCgCCCCgCCGAc--- -3'
miRNA:   3'- -GCUUuaaa-GGCGGG-GGGG-GGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 34451 0.67 0.974059
Target:  5'- gGAAGUggCCGCCUgggugcgagaaagCCUCCUggGGACc -3'
miRNA:   3'- gCUUUAaaGGCGGG-------------GGGGGGuuUUUG- -5'
6482 3' -51.2 NC_001847.1 + 35369 0.71 0.863525
Target:  5'- -------gCUGCCCCCCgCCCAAAGccGCg -3'
miRNA:   3'- gcuuuaaaGGCGGGGGG-GGGUUUU--UG- -5'
6482 3' -51.2 NC_001847.1 + 37424 0.66 0.987208
Target:  5'- -----cUUCCGCUucugCCCCCgCCGAcGACg -3'
miRNA:   3'- gcuuuaAAGGCGG----GGGGG-GGUUuUUG- -5'
6482 3' -51.2 NC_001847.1 + 39388 0.67 0.968447
Target:  5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5'
6482 3' -51.2 NC_001847.1 + 39415 0.67 0.968447
Target:  5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.