miRNA display CGI


Results 21 - 40 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 80610 0.66 0.981603
Target:  5'- -------cCCGCCCCCgCCCCcgccGCg -3'
miRNA:   3'- gcuuuaaaGGCGGGGG-GGGGuuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 80641 0.66 0.98551
Target:  5'- -------aCCGCCCCCCaCCCc----- -3'
miRNA:   3'- gcuuuaaaGGCGGGGGG-GGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 26849 0.66 0.981603
Target:  5'- aCGAGAgcagUCCGCCCaggcaCCCGAGuGCc -3'
miRNA:   3'- -GCUUUaa--AGGCGGGggg--GGGUUUuUG- -5'
6482 3' -51.2 NC_001847.1 + 634 0.66 0.99014
Target:  5'- --------gCGCCUCCCCCCGcccccGAGGCc -3'
miRNA:   3'- gcuuuaaagGCGGGGGGGGGU-----UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 23720 0.66 0.988748
Target:  5'- ------cUCC-CCCCgCCCCCGGccGAGCg -3'
miRNA:   3'- gcuuuaaAGGcGGGG-GGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 208 0.66 0.987208
Target:  5'- -------nCCGCCCCCggcgCCCGGGGGCc -3'
miRNA:   3'- gcuuuaaaGGCGGGGGg---GGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 32476 0.66 0.98551
Target:  5'- -------cCCGCCCCCCCgCCcuc-GCg -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGG-GGuuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 75980 0.66 0.99014
Target:  5'- -------aCCGCCgCCCCCUGGccAAGCg -3'
miRNA:   3'- gcuuuaaaGGCGGgGGGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 102718 0.66 0.981603
Target:  5'- gCGAAAggcCCGCaCCCCCcggcugCCCcAAGGCg -3'
miRNA:   3'- -GCUUUaaaGGCG-GGGGG------GGGuUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 119819 0.66 0.983645
Target:  5'- -------cCCGCCCgCCCCCGcu-ACg -3'
miRNA:   3'- gcuuuaaaGGCGGGgGGGGGUuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 61772 0.66 0.983645
Target:  5'- cCGAagacAAUgcCCGCCgaCCCCCCGccGGCa -3'
miRNA:   3'- -GCU----UUAaaGGCGGg-GGGGGGUuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 27057 0.66 0.98551
Target:  5'- aGAGAggcCCGCagCCCCCCgGGcgGCa -3'
miRNA:   3'- gCUUUaaaGGCGg-GGGGGGgUUuuUG- -5'
6482 3' -51.2 NC_001847.1 + 107149 0.66 0.98551
Target:  5'- uCGGccgcggCCGCCUCCgCCCCGGccGCg -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGG-GGGGUUuuUG- -5'
6482 3' -51.2 NC_001847.1 + 102203 0.66 0.987208
Target:  5'- ------cUCCGCCCCCccggCCCCGc---- -3'
miRNA:   3'- gcuuuaaAGGCGGGGG----GGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 107948 0.66 0.987208
Target:  5'- -----cUUCCcuucCCCCCCCCCAc---- -3'
miRNA:   3'- gcuuuaAAGGc---GGGGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 103021 0.66 0.987208
Target:  5'- -------nCCGCCCCCggcgCCCGGGGGCc -3'
miRNA:   3'- gcuuuaaaGGCGGGGGg---GGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 39415 0.67 0.968447
Target:  5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5'
6482 3' -51.2 NC_001847.1 + 124398 0.67 0.979377
Target:  5'- aGAGGgggCCgcgggGCCCCgCCCCCcuAAACu -3'
miRNA:   3'- gCUUUaaaGG-----CGGGG-GGGGGuuUUUG- -5'
6482 3' -51.2 NC_001847.1 + 39388 0.67 0.968447
Target:  5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5'
6482 3' -51.2 NC_001847.1 + 39442 0.67 0.968447
Target:  5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.