Results 41 - 60 of 133 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 124398 | 0.67 | 0.979377 |
Target: 5'- aGAGGgggCCgcgggGCCCCgCCCCCcuAAACu -3' miRNA: 3'- gCUUUaaaGG-----CGGGG-GGGGGuuUUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 99851 | 0.67 | 0.976956 |
Target: 5'- -------cCCGCCCCCgCCCAc---- -3' miRNA: 3'- gcuuuaaaGGCGGGGGgGGGUuuuug -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 101283 | 0.67 | 0.976956 |
Target: 5'- -------aCUGCCCgCCCCCCAGcccGCg -3' miRNA: 3'- gcuuuaaaGGCGGG-GGGGGGUUuu-UG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 132592 | 0.67 | 0.976956 |
Target: 5'- aGAGGg--CCGCCCCggCCCGGcgGCg -3' miRNA: 3'- gCUUUaaaGGCGGGGggGGGUUuuUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 102359 | 0.67 | 0.96813 |
Target: 5'- ------gUCCGCCCccggcccuCCCCCCAcagggaucuccucGAAGCa -3' miRNA: 3'- gcuuuaaAGGCGGG--------GGGGGGU-------------UUUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 40269 | 0.67 | 0.968447 |
Target: 5'- gCGGAuUUgcgagCUGCCCgcgCCCCCCAAGGu- -3' miRNA: 3'- -GCUUuAAa----GGCGGG---GGGGGGUUUUug -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 39388 | 0.67 | 0.968447 |
Target: 5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3' miRNA: 3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 39415 | 0.67 | 0.968447 |
Target: 5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3' miRNA: 3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 39469 | 0.67 | 0.968447 |
Target: 5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3' miRNA: 3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 39496 | 0.67 | 0.968447 |
Target: 5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3' miRNA: 3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 50416 | 0.67 | 0.968447 |
Target: 5'- -cAGAUcgCCGCCCCCUacgcugCCGGGAACc -3' miRNA: 3'- gcUUUAaaGGCGGGGGGg-----GGUUUUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 111866 | 0.67 | 0.968447 |
Target: 5'- ------cUCCGCCCCCCCgugcagcgcuCCAuu-GCa -3' miRNA: 3'- gcuuuaaAGGCGGGGGGG----------GGUuuuUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 127724 | 0.67 | 0.968447 |
Target: 5'- --------aCGCCCCCCCCCc----- -3' miRNA: 3'- gcuuuaaagGCGGGGGGGGGuuuuug -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 26527 | 0.67 | 0.971499 |
Target: 5'- -------cCCGCCgUCCCCCGGAGcACg -3' miRNA: 3'- gcuuuaaaGGCGGgGGGGGGUUUU-UG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 105221 | 0.67 | 0.974333 |
Target: 5'- aGAG----UCGUCCUCCCCCGAGGGg -3' miRNA: 3'- gCUUuaaaGGCGGGGGGGGGUUUUUg -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 72206 | 0.67 | 0.974333 |
Target: 5'- cCGGA---UCUGCCCCCCgaCgAGGAGCc -3' miRNA: 3'- -GCUUuaaAGGCGGGGGGg-GgUUUUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 126170 | 0.67 | 0.974333 |
Target: 5'- ------gUCUGCCCgCCCCCGGGc-- -3' miRNA: 3'- gcuuuaaAGGCGGGgGGGGGUUUuug -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 97131 | 0.67 | 0.975407 |
Target: 5'- gCGuguagUCCGCCaCCguggccacccgggccUCCCCAAAGACa -3' miRNA: 3'- -GCuuuaaAGGCGG-GG---------------GGGGGUUUUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 73827 | 0.67 | 0.976703 |
Target: 5'- -------cCCGCCCCgCCCCGcgcacccgcgcaaAAAACg -3' miRNA: 3'- gcuuuaaaGGCGGGGgGGGGU-------------UUUUG- -5' |
|||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 59811 | 0.67 | 0.979377 |
Target: 5'- -------aCUGCCgCCCgCCCGGGAGCg -3' miRNA: 3'- gcuuuaaaGGCGGgGGG-GGGUUUUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home