miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 39442 0.67 0.968447
Target:  5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5'
6482 3' -51.2 NC_001847.1 + 39469 0.67 0.968447
Target:  5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5'
6482 3' -51.2 NC_001847.1 + 39496 0.67 0.968447
Target:  5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5'
6482 3' -51.2 NC_001847.1 + 39607 0.66 0.988748
Target:  5'- gCGGcg---CgGCCCCagCCCCAGGGGCa -3'
miRNA:   3'- -GCUuuaaaGgCGGGGg-GGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 39982 0.66 0.988748
Target:  5'- cCGA----UCgCGCCCCCCgCCAugccGGCa -3'
miRNA:   3'- -GCUuuaaAG-GCGGGGGGgGGUuu--UUG- -5'
6482 3' -51.2 NC_001847.1 + 40269 0.67 0.968447
Target:  5'- gCGGAuUUgcgagCUGCCCgcgCCCCCCAAGGu- -3'
miRNA:   3'- -GCUUuAAa----GGCGGG---GGGGGGUUUUug -5'
6482 3' -51.2 NC_001847.1 + 44499 0.74 0.714081
Target:  5'- uGAuGUUUCCuuuCCCCCCCCCAu---- -3'
miRNA:   3'- gCUuUAAAGGc--GGGGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 48646 0.66 0.988748
Target:  5'- gCGggGcg-CCGCCgCCCCCgCAGc--- -3'
miRNA:   3'- -GCuuUaaaGGCGGgGGGGG-GUUuuug -5'
6482 3' -51.2 NC_001847.1 + 50416 0.67 0.968447
Target:  5'- -cAGAUcgCCGCCCCCUacgcugCCGGGAACc -3'
miRNA:   3'- gcUUUAaaGGCGGGGGGg-----GGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 50679 0.73 0.774649
Target:  5'- -------cCCGCCCCCCCCCc----- -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 51195 0.68 0.96517
Target:  5'- ------cUCCGCCCCCggCCCCGcgcGCa -3'
miRNA:   3'- gcuuuaaAGGCGGGGG--GGGGUuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 54295 0.67 0.974333
Target:  5'- uCGAcgcgcgCCGCCgcccggaucugCCCCCCCAAGucGCg -3'
miRNA:   3'- -GCUuuaaa-GGCGG-----------GGGGGGGUUUu-UG- -5'
6482 3' -51.2 NC_001847.1 + 55115 0.69 0.94045
Target:  5'- gCGAugacgCCGaCCCCCCCCGcgccAAACg -3'
miRNA:   3'- -GCUuuaaaGGCgGGGGGGGGUu---UUUG- -5'
6482 3' -51.2 NC_001847.1 + 55561 0.68 0.961661
Target:  5'- --------gCGCCCCCgCCCGAAGAg -3'
miRNA:   3'- gcuuuaaagGCGGGGGgGGGUUUUUg -5'
6482 3' -51.2 NC_001847.1 + 58736 0.71 0.87809
Target:  5'- gCGggGUgcccCCGCCgcggcccccggcgCCCCCCCcGAGGCc -3'
miRNA:   3'- -GCuuUAaa--GGCGG-------------GGGGGGGuUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 59811 0.67 0.979377
Target:  5'- -------aCUGCCgCCCgCCCGGGAGCg -3'
miRNA:   3'- gcuuuaaaGGCGGgGGG-GGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 61772 0.66 0.983645
Target:  5'- cCGAagacAAUgcCCGCCgaCCCCCCGccGGCa -3'
miRNA:   3'- -GCU----UUAaaGGCGGg-GGGGGGUuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 61923 0.69 0.94045
Target:  5'- -------gCCGCCCCCCUCCucc-GCg -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 63683 0.68 0.957913
Target:  5'- -------gCCGCCaUgCCCCCGGAAGCg -3'
miRNA:   3'- gcuuuaaaGGCGG-GgGGGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 70370 0.67 0.979377
Target:  5'- gGAAAaggCCGCCCCgaagagCCCCGGGuGCg -3'
miRNA:   3'- gCUUUaaaGGCGGGGg-----GGGGUUUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.