Results 41 - 60 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 88625 | 0.72 | 0.84731 |
Target: 5'- -------gCCGCCgCCCCCCGAGcGCu -3' miRNA: 3'- gcuuuaaaGGCGGgGGGGGGUUUuUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 107053 | 0.72 | 0.83888 |
Target: 5'- cCGAGGgcaCCGCCgCCCCCCGc---- -3' miRNA: 3'- -GCUUUaaaGGCGGgGGGGGGUuuuug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 19581 | 0.72 | 0.830247 |
Target: 5'- aGGAGUUU-CGCCCCCCUCCc----- -3' miRNA: 3'- gCUUUAAAgGCGGGGGGGGGuuuuug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 130287 | 0.73 | 0.78432 |
Target: 5'- -------gCCGCCCCCCCCCc----- -3' miRNA: 3'- gcuuuaaaGGCGGGGGGGGGuuuuug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 128304 | 0.74 | 0.714081 |
Target: 5'- -------gCCGCCCCCCCCCcc-AACu -3' miRNA: 3'- gcuuuaaaGGCGGGGGGGGGuuuUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 103001 | 0.69 | 0.935447 |
Target: 5'- cCGggGcccCCGCCCCCgCCCCc----- -3' miRNA: 3'- -GCuuUaaaGGCGGGGG-GGGGuuuuug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 107096 | 0.69 | 0.94045 |
Target: 5'- uGAGGggcgCCGCCCCCgCCUCGGc--- -3' miRNA: 3'- gCUUUaaa-GGCGGGGG-GGGGUUuuug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 39388 | 0.67 | 0.968447 |
Target: 5'- gCGGcccgcgCCGCCCCCCgCgCCAGAGc- -3' miRNA: 3'- -GCUuuaaa-GGCGGGGGG-G-GGUUUUug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 40269 | 0.67 | 0.968447 |
Target: 5'- gCGGAuUUgcgagCUGCCCgcgCCCCCCAAGGu- -3' miRNA: 3'- -GCUUuAAa----GGCGGG---GGGGGGUUUUug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 102359 | 0.67 | 0.96813 |
Target: 5'- ------gUCCGCCCccggcccuCCCCCCAcagggaucuccucGAAGCa -3' miRNA: 3'- gcuuuaaAGGCGGG--------GGGGGGU-------------UUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 123319 | 0.68 | 0.96517 |
Target: 5'- --------gCGCCCCCCCCCccgcGCg -3' miRNA: 3'- gcuuuaaagGCGGGGGGGGGuuuuUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 96650 | 0.68 | 0.96517 |
Target: 5'- -------aCCGCgCCgCCCCCCGGcGACg -3' miRNA: 3'- gcuuuaaaGGCG-GG-GGGGGGUUuUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 109784 | 0.68 | 0.961661 |
Target: 5'- -------gCCGCCCCCUgCCAucAGCu -3' miRNA: 3'- gcuuuaaaGGCGGGGGGgGGUuuUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 55561 | 0.68 | 0.961661 |
Target: 5'- --------gCGCCCCCgCCCGAAGAg -3' miRNA: 3'- gcuuuaaagGCGGGGGgGGGUUUUUg -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 126439 | 0.68 | 0.961297 |
Target: 5'- uGAAggUUCugcagugCGCCCCCCUCCucuAGCc -3' miRNA: 3'- gCUUuaAAG-------GCGGGGGGGGGuuuUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 63683 | 0.68 | 0.957913 |
Target: 5'- -------gCCGCCaUgCCCCCGGAAGCg -3' miRNA: 3'- gcuuuaaaGGCGG-GgGGGGGUUUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 81277 | 0.68 | 0.957913 |
Target: 5'- aGAGAcggCCGCCCCacagcaCCCCCu--GACc -3' miRNA: 3'- gCUUUaaaGGCGGGG------GGGGGuuuUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 78781 | 0.68 | 0.953923 |
Target: 5'- cCGAGGUcgugCCGCCCgCgCCCGcGGAGCa -3' miRNA: 3'- -GCUUUAaa--GGCGGGgGgGGGU-UUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 110351 | 0.68 | 0.952678 |
Target: 5'- -uGAGUUUCUauucguccuuuuguGCCCCCCCCCc----- -3' miRNA: 3'- gcUUUAAAGG--------------CGGGGGGGGGuuuuug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 61923 | 0.69 | 0.94045 |
Target: 5'- -------gCCGCCCCCCUCCucc-GCg -3' miRNA: 3'- gcuuuaaaGGCGGGGGGGGGuuuuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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