miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 118529 0.83 0.309419
Target:  5'- --------gCGCCCCCCCCCAAAGACc -3'
miRNA:   3'- gcuuuaaagGCGGGGGGGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 118001 0.66 0.988748
Target:  5'- -------aCCGCCCaCCCgCCCAAccuGCg -3'
miRNA:   3'- gcuuuaaaGGCGGG-GGG-GGGUUuu-UG- -5'
6482 3' -51.2 NC_001847.1 + 117263 0.7 0.918883
Target:  5'- -------gCCGCCcgCCCCgCCCGAGGACg -3'
miRNA:   3'- gcuuuaaaGGCGG--GGGG-GGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 117079 0.67 0.976956
Target:  5'- ------cUCCGCCCUccccgUCCCCAaccGAGACg -3'
miRNA:   3'- gcuuuaaAGGCGGGG-----GGGGGU---UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 114615 0.66 0.99014
Target:  5'- aGAAGUUcacgUCCuuccaguggGCCCCCgCCCgCGAcGACg -3'
miRNA:   3'- gCUUUAA----AGG---------CGGGGG-GGG-GUUuUUG- -5'
6482 3' -51.2 NC_001847.1 + 113172 0.69 0.930186
Target:  5'- gCGAGGgggCCGCcgccgaaagCCCCCCCCGGu--- -3'
miRNA:   3'- -GCUUUaaaGGCG---------GGGGGGGGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 112725 0.66 0.988748
Target:  5'- ------gUCUcggGCCCCgCCCCCGcgGACg -3'
miRNA:   3'- gcuuuaaAGG---CGGGG-GGGGGUuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 112502 0.67 0.979377
Target:  5'- cCGggGcaagcCCGCCCUCCCCgGAc--- -3'
miRNA:   3'- -GCuuUaaa--GGCGGGGGGGGgUUuuug -5'
6482 3' -51.2 NC_001847.1 + 111866 0.67 0.968447
Target:  5'- ------cUCCGCCCCCCCgugcagcgcuCCAuu-GCa -3'
miRNA:   3'- gcuuuaaAGGCGGGGGGG----------GGUuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 110351 0.68 0.952678
Target:  5'- -uGAGUUUCUauucguccuuuuguGCCCCCCCCCc----- -3'
miRNA:   3'- gcUUUAAAGG--------------CGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 110079 0.67 0.979377
Target:  5'- ----uUUUCCcccucCCCCCCCCCAu---- -3'
miRNA:   3'- gcuuuAAAGGc----GGGGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 109784 0.68 0.961661
Target:  5'- -------gCCGCCCCCUgCCAucAGCu -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGgGGUuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 109037 0.67 0.976956
Target:  5'- gGAAGgg-CCGCCaCgCCCCUCAAAc-- -3'
miRNA:   3'- gCUUUaaaGGCGG-G-GGGGGGUUUuug -5'
6482 3' -51.2 NC_001847.1 + 108672 0.68 0.96517
Target:  5'- -cGAGUUUCCGCUCCCCgCgCuggcGAACa -3'
miRNA:   3'- gcUUUAAAGGCGGGGGGgG-Guu--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 107948 0.66 0.987208
Target:  5'- -----cUUCCcuucCCCCCCCCCAc---- -3'
miRNA:   3'- gcuuuaAAGGc---GGGGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 107222 0.7 0.912843
Target:  5'- cCGAGAcggCCGCCCUggCCUCCGcAAGCg -3'
miRNA:   3'- -GCUUUaaaGGCGGGG--GGGGGUuUUUG- -5'
6482 3' -51.2 NC_001847.1 + 107149 0.66 0.98551
Target:  5'- uCGGccgcggCCGCCUCCgCCCCGGccGCg -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGG-GGGGUUuuUG- -5'
6482 3' -51.2 NC_001847.1 + 107096 0.69 0.94045
Target:  5'- uGAGGggcgCCGCCCCCgCCUCGGc--- -3'
miRNA:   3'- gCUUUaaa-GGCGGGGG-GGGGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 107053 0.72 0.83888
Target:  5'- cCGAGGgcaCCGCCgCCCCCCGc---- -3'
miRNA:   3'- -GCUUUaaaGGCGGgGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 105221 0.67 0.974333
Target:  5'- aGAG----UCGUCCUCCCCCGAGGGg -3'
miRNA:   3'- gCUUuaaaGGCGGGGGGGGGUUUUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.