miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 135138 0.67 0.976956
Target:  5'- ------cUCCGCgCCCCCCgCgCGGGGGCu -3'
miRNA:   3'- gcuuuaaAGGCG-GGGGGG-G-GUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 135095 1.11 0.005043
Target:  5'- cCGAAAUUUCCGCCCCCCCCCAAAAACa -3'
miRNA:   3'- -GCUUUAAAGGCGGGGGGGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 135086 0.66 0.99014
Target:  5'- -------cCCGCCCCCgCCCGcc-GCa -3'
miRNA:   3'- gcuuuaaaGGCGGGGGgGGGUuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 132592 0.67 0.976956
Target:  5'- aGAGGg--CCGCCCCggCCCGGcgGCg -3'
miRNA:   3'- gCUUUaaaGGCGGGGggGGGUUuuUG- -5'
6482 3' -51.2 NC_001847.1 + 130287 0.73 0.78432
Target:  5'- -------gCCGCCCCCCCCCc----- -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 129880 0.67 0.974333
Target:  5'- uGGAcUUUCgccucaagCGCCCCCUCCCccgcGGAGACc -3'
miRNA:   3'- gCUUuAAAG--------GCGGGGGGGGG----UUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 129622 0.68 0.957913
Target:  5'- aCGAGcgUcgCCGCCCUagaCCCCGAc--- -3'
miRNA:   3'- -GCUUuaAa-GGCGGGGg--GGGGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 128304 0.74 0.714081
Target:  5'- -------gCCGCCCCCCCCCcc-AACu -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 127724 0.67 0.968447
Target:  5'- --------aCGCCCCCCCCCc----- -3'
miRNA:   3'- gcuuuaaagGCGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 126645 0.66 0.99014
Target:  5'- aGggGg--CCcacguaagggGCCCCgCCCCCGGccGAGCg -3'
miRNA:   3'- gCuuUaaaGG----------CGGGG-GGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 126533 0.66 0.988748
Target:  5'- ------cUCC-CCCCgCCCCCGGccGAGCg -3'
miRNA:   3'- gcuuuaaAGGcGGGG-GGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 126439 0.68 0.961297
Target:  5'- uGAAggUUCugcagugCGCCCCCCUCCucuAGCc -3'
miRNA:   3'- gCUUuaAAG-------GCGGGGGGGGGuuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 126170 0.67 0.974333
Target:  5'- ------gUCUGCCCgCCCCCGGGc-- -3'
miRNA:   3'- gcuuuaaAGGCGGGgGGGGGUUUuug -5'
6482 3' -51.2 NC_001847.1 + 124398 0.67 0.979377
Target:  5'- aGAGGgggCCgcgggGCCCCgCCCCCcuAAACu -3'
miRNA:   3'- gCUUUaaaGG-----CGGGG-GGGGGuuUUUG- -5'
6482 3' -51.2 NC_001847.1 + 123910 0.68 0.96517
Target:  5'- cCGAAAacggCgGCUCCUCCaCCAGAGGCc -3'
miRNA:   3'- -GCUUUaaa-GgCGGGGGGG-GGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 123319 0.68 0.96517
Target:  5'- --------gCGCCCCCCCCCccgcGCg -3'
miRNA:   3'- gcuuuaaagGCGGGGGGGGGuuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 122652 0.67 0.979377
Target:  5'- cCGGGuucuuggCCGCCCCCgCCgCCAcgcggGAAGCc -3'
miRNA:   3'- -GCUUuaaa---GGCGGGGG-GG-GGU-----UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 119819 0.66 0.983645
Target:  5'- -------cCCGCCCgCCCCCGcu-ACg -3'
miRNA:   3'- gcuuuaaaGGCGGGgGGGGGUuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 119667 0.71 0.878833
Target:  5'- gGAGGgcaacggCgGCCCCCCaggaCCCGAAGGCg -3'
miRNA:   3'- gCUUUaaa----GgCGGGGGG----GGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 119384 0.66 0.987842
Target:  5'- gCGAAAgcgggCCGCCCgcgucggcauaggcgCCCUCCAGGuuGCg -3'
miRNA:   3'- -GCUUUaaa--GGCGGG---------------GGGGGGUUUu-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.