miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 63683 0.68 0.957913
Target:  5'- -------gCCGCCaUgCCCCCGGAAGCg -3'
miRNA:   3'- gcuuuaaaGGCGG-GgGGGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 92191 0.69 0.930186
Target:  5'- -------cCCGCCCCCCCCgCGcgcGGCg -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGG-GUuu-UUG- -5'
6482 3' -51.2 NC_001847.1 + 97984 0.69 0.935447
Target:  5'- aCGAGGUg-CCGCUUCCcggccgCCCCAAAGGCc -3'
miRNA:   3'- -GCUUUAaaGGCGGGGG------GGGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 103001 0.69 0.935447
Target:  5'- cCGggGcccCCGCCCCCgCCCCc----- -3'
miRNA:   3'- -GCuuUaaaGGCGGGGG-GGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 107096 0.69 0.94045
Target:  5'- uGAGGggcgCCGCCCCCgCCUCGGc--- -3'
miRNA:   3'- gCUUUaaa-GGCGGGGG-GGGGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 61923 0.69 0.94045
Target:  5'- -------gCCGCCCCCCUCCucc-GCg -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuuUG- -5'
6482 3' -51.2 NC_001847.1 + 110351 0.68 0.952678
Target:  5'- -uGAGUUUCUauucguccuuuuguGCCCCCCCCCc----- -3'
miRNA:   3'- gcUUUAAAGG--------------CGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 78781 0.68 0.953923
Target:  5'- cCGAGGUcgugCCGCCCgCgCCCGcGGAGCa -3'
miRNA:   3'- -GCUUUAaa--GGCGGGgGgGGGU-UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 81277 0.68 0.957913
Target:  5'- aGAGAcggCCGCCCCacagcaCCCCCu--GACc -3'
miRNA:   3'- gCUUUaaaGGCGGGG------GGGGGuuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 113172 0.69 0.930186
Target:  5'- gCGAGGgggCCGCcgccgaaagCCCCCCCCGGu--- -3'
miRNA:   3'- -GCUUUaaaGGCG---------GGGGGGGGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 78311 0.69 0.924665
Target:  5'- gCGGcugggCCGCCCCCuCCCCGc---- -3'
miRNA:   3'- -GCUuuaaaGGCGGGGG-GGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 17811 0.7 0.918883
Target:  5'- gCGggGggcgaggCCGCCCCCCgCCGc---- -3'
miRNA:   3'- -GCuuUaaa----GGCGGGGGGgGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 128304 0.74 0.714081
Target:  5'- -------gCCGCCCCCCCCCcc-AACu -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuUUG- -5'
6482 3' -51.2 NC_001847.1 + 130287 0.73 0.78432
Target:  5'- -------gCCGCCCCCCCCCc----- -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 19581 0.72 0.830247
Target:  5'- aGGAGUUU-CGCCCCCCUCCc----- -3'
miRNA:   3'- gCUUUAAAgGCGGGGGGGGGuuuuug -5'
6482 3' -51.2 NC_001847.1 + 107053 0.72 0.83888
Target:  5'- cCGAGGgcaCCGCCgCCCCCCGc---- -3'
miRNA:   3'- -GCUUUaaaGGCGGgGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 88625 0.72 0.84731
Target:  5'- -------gCCGCCgCCCCCCGAGcGCu -3'
miRNA:   3'- gcuuuaaaGGCGGgGGGGGGUUUuUG- -5'
6482 3' -51.2 NC_001847.1 + 33019 0.71 0.878833
Target:  5'- gCGGAGUgccgCCGCCCUCuCCgCCGAGcugGACg -3'
miRNA:   3'- -GCUUUAaa--GGCGGGGG-GG-GGUUU---UUG- -5'
6482 3' -51.2 NC_001847.1 + 119667 0.71 0.878833
Target:  5'- gGAGGgcaacggCgGCCCCCCaggaCCCGAAGGCg -3'
miRNA:   3'- gCUUUaaa----GgCGGGGGG----GGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 18095 0.7 0.912843
Target:  5'- gCGAGGcUUCCGCCuccucggcgagCCCCCgCCGGgcAGACa -3'
miRNA:   3'- -GCUUUaAAGGCGG-----------GGGGG-GGUU--UUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.