Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 135086 | 0.66 | 0.99014 |
Target: 5'- -------cCCGCCCCCgCCCGcc-GCa -3' miRNA: 3'- gcuuuaaaGGCGGGGGgGGGUuuuUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 4336 | 0.66 | 0.98551 |
Target: 5'- uCGGccgcggCCGCCUCCgCCCCGGccGCg -3' miRNA: 3'- -GCUuuaaa-GGCGGGGG-GGGGUUuuUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 59811 | 0.67 | 0.979377 |
Target: 5'- -------aCUGCCgCCCgCCCGGGAGCg -3' miRNA: 3'- gcuuuaaaGGCGGgGGG-GGGUUUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 32282 | 1.11 | 0.005043 |
Target: 5'- cCGAAAUUUCCGCCCCCCCCCAAAAACa -3' miRNA: 3'- -GCUUUAAAGGCGGGGGGGGGUUUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 34047 | 0.66 | 0.99014 |
Target: 5'- gCGAAcgcgcCCGCCCgCCCCgCCGAc--- -3' miRNA: 3'- -GCUUuaaa-GGCGGG-GGGG-GGUUuuug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 634 | 0.66 | 0.99014 |
Target: 5'- --------gCGCCUCCCCCCGcccccGAGGCc -3' miRNA: 3'- gcuuuaaagGCGGGGGGGGGU-----UUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 23832 | 0.66 | 0.99014 |
Target: 5'- aGggGg--CCcacguaagggGCCCCgCCCCCGGccGAGCg -3' miRNA: 3'- gCuuUaaaGG----------CGGGG-GGGGGUU--UUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 23720 | 0.66 | 0.988748 |
Target: 5'- ------cUCC-CCCCgCCCCCGGccGAGCg -3' miRNA: 3'- gcuuuaaAGGcGGGG-GGGGGUU--UUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 37424 | 0.66 | 0.987208 |
Target: 5'- -----cUUCCGCUucugCCCCCgCCGAcGACg -3' miRNA: 3'- gcuuuaAAGGCGG----GGGGG-GGUUuUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 80641 | 0.66 | 0.98551 |
Target: 5'- -------aCCGCCCCCCaCCCc----- -3' miRNA: 3'- gcuuuaaaGGCGGGGGG-GGGuuuuug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 208 | 0.66 | 0.987208 |
Target: 5'- -------nCCGCCCCCggcgCCCGGGGGCc -3' miRNA: 3'- gcuuuaaaGGCGGGGGg---GGGUUUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 119384 | 0.66 | 0.987842 |
Target: 5'- gCGAAAgcgggCCGCCCgcgucggcauaggcgCCCUCCAGGuuGCg -3' miRNA: 3'- -GCUUUaaa--GGCGGG---------------GGGGGGUUUu-UG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 114615 | 0.66 | 0.99014 |
Target: 5'- aGAAGUUcacgUCCuuccaguggGCCCCCgCCCgCGAcGACg -3' miRNA: 3'- gCUUUAA----AGG---------CGGGGG-GGG-GUUuUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 24921 | 0.66 | 0.987208 |
Target: 5'- -------nCC-CCCCCCCCCAuAAAg -3' miRNA: 3'- gcuuuaaaGGcGGGGGGGGGUuUUUg -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 75980 | 0.66 | 0.99014 |
Target: 5'- -------aCCGCCgCCCCCUGGccAAGCg -3' miRNA: 3'- gcuuuaaaGGCGGgGGGGGGUU--UUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 9912 | 0.66 | 0.988748 |
Target: 5'- ------gUCUcggGCCCCgCCCCCGcgGACg -3' miRNA: 3'- gcuuuaaAGG---CGGGG-GGGGGUuuUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 32476 | 0.66 | 0.98551 |
Target: 5'- -------cCCGCCCCCCCgCCcuc-GCg -3' miRNA: 3'- gcuuuaaaGGCGGGGGGG-GGuuuuUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 122652 | 0.67 | 0.979377 |
Target: 5'- cCGGGuucuuggCCGCCCCCgCCgCCAcgcggGAAGCc -3' miRNA: 3'- -GCUUuaaa---GGCGGGGG-GG-GGU-----UUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 75800 | 0.66 | 0.99014 |
Target: 5'- -------gCCGCUCCgCCCCCGAugccGGGCu -3' miRNA: 3'- gcuuuaaaGGCGGGG-GGGGGUU----UUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 118001 | 0.66 | 0.988748 |
Target: 5'- -------aCCGCCCaCCCgCCCAAccuGCg -3' miRNA: 3'- gcuuuaaaGGCGGG-GGG-GGGUUuu-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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