miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 3' -51.2 NC_001847.1 + 7266 0.67 0.979377
Target:  5'- ----uUUUCCcccucCCCCCCCCCAu---- -3'
miRNA:   3'- gcuuuAAAGGc----GGGGGGGGGUuuuug -5'
6482 3' -51.2 NC_001847.1 + 59811 0.67 0.979377
Target:  5'- -------aCUGCCgCCCgCCCGGGAGCg -3'
miRNA:   3'- gcuuuaaaGGCGGgGGG-GGGUUUUUG- -5'
6482 3' -51.2 NC_001847.1 + 119384 0.66 0.987842
Target:  5'- gCGAAAgcgggCCGCCCgcgucggcauaggcgCCCUCCAGGuuGCg -3'
miRNA:   3'- -GCUUUaaa--GGCGGG---------------GGGGGGUUUu-UG- -5'
6482 3' -51.2 NC_001847.1 + 75800 0.66 0.99014
Target:  5'- -------gCCGCUCCgCCCCCGAugccGGGCu -3'
miRNA:   3'- gcuuuaaaGGCGGGG-GGGGGUU----UUUG- -5'
6482 3' -51.2 NC_001847.1 + 80683 0.67 0.971499
Target:  5'- -------cCCGCCCUCCUCCucGGGCu -3'
miRNA:   3'- gcuuuaaaGGCGGGGGGGGGuuUUUG- -5'
6482 3' -51.2 NC_001847.1 + 109037 0.67 0.976956
Target:  5'- gGAAGgg-CCGCCaCgCCCCUCAAAc-- -3'
miRNA:   3'- gCUUUaaaGGCGG-G-GGGGGGUUUuug -5'
6482 3' -51.2 NC_001847.1 + 4336 0.66 0.98551
Target:  5'- uCGGccgcggCCGCCUCCgCCCCGGccGCg -3'
miRNA:   3'- -GCUuuaaa-GGCGGGGG-GGGGUUuuUG- -5'
6482 3' -51.2 NC_001847.1 + 75980 0.66 0.99014
Target:  5'- -------aCCGCCgCCCCCUGGccAAGCg -3'
miRNA:   3'- gcuuuaaaGGCGGgGGGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 117079 0.67 0.976956
Target:  5'- ------cUCCGCCCUccccgUCCCCAaccGAGACg -3'
miRNA:   3'- gcuuuaaAGGCGGGG-----GGGGGU---UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 114615 0.66 0.99014
Target:  5'- aGAAGUUcacgUCCuuccaguggGCCCCCgCCCgCGAcGACg -3'
miRNA:   3'- gCUUUAA----AGG---------CGGGGG-GGG-GUUuUUG- -5'
6482 3' -51.2 NC_001847.1 + 122652 0.67 0.979377
Target:  5'- cCGGGuucuuggCCGCCCCCgCCgCCAcgcggGAAGCc -3'
miRNA:   3'- -GCUUuaaa---GGCGGGGG-GG-GGU-----UUUUG- -5'
6482 3' -51.2 NC_001847.1 + 21585 0.67 0.979377
Target:  5'- aGAGGgggCCgcgggGCCCCgCCCCCcuAAACu -3'
miRNA:   3'- gCUUUaaaGG-----CGGGG-GGGGGuuUUUG- -5'
6482 3' -51.2 NC_001847.1 + 24921 0.66 0.987208
Target:  5'- -------nCC-CCCCCCCCCAuAAAg -3'
miRNA:   3'- gcuuuaaaGGcGGGGGGGGGUuUUUg -5'
6482 3' -51.2 NC_001847.1 + 37424 0.66 0.987208
Target:  5'- -----cUUCCGCUucugCCCCCgCCGAcGACg -3'
miRNA:   3'- gcuuuaAAGGCGG----GGGGG-GGUUuUUG- -5'
6482 3' -51.2 NC_001847.1 + 23832 0.66 0.99014
Target:  5'- aGggGg--CCcacguaagggGCCCCgCCCCCGGccGAGCg -3'
miRNA:   3'- gCuuUaaaGG----------CGGGG-GGGGGUU--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 34047 0.66 0.99014
Target:  5'- gCGAAcgcgcCCGCCCgCCCCgCCGAc--- -3'
miRNA:   3'- -GCUUuaaa-GGCGGG-GGGG-GGUUuuug -5'
6482 3' -51.2 NC_001847.1 + 108672 0.68 0.96517
Target:  5'- -cGAGUUUCCGCUCCCCgCgCuggcGAACa -3'
miRNA:   3'- gcUUUAAAGGCGGGGGGgG-Guu--UUUG- -5'
6482 3' -51.2 NC_001847.1 + 98305 0.67 0.971499
Target:  5'- cCGAGcgcacgUCCGCCagCCCCCAGucGGCg -3'
miRNA:   3'- -GCUUuaa---AGGCGGggGGGGGUUu-UUG- -5'
6482 3' -51.2 NC_001847.1 + 23357 0.67 0.974333
Target:  5'- ------gUCUGCCCgCCCCCGGGc-- -3'
miRNA:   3'- gcuuuaaAGGCGGGgGGGGGUUUuug -5'
6482 3' -51.2 NC_001847.1 + 29779 0.67 0.976956
Target:  5'- aGAGGg--CCGCCCCggCCCGGcgGCg -3'
miRNA:   3'- gCUUUaaaGGCGGGGggGGGUUuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.