Results 41 - 60 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6482 | 3' | -51.2 | NC_001847.1 | + | 59811 | 0.67 | 0.979377 |
Target: 5'- -------aCUGCCgCCCgCCCGGGAGCg -3' miRNA: 3'- gcuuuaaaGGCGGgGGG-GGGUUUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 122652 | 0.67 | 0.979377 |
Target: 5'- cCGGGuucuuggCCGCCCCCgCCgCCAcgcggGAAGCc -3' miRNA: 3'- -GCUUuaaa---GGCGGGGG-GG-GGU-----UUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 21585 | 0.67 | 0.979377 |
Target: 5'- aGAGGgggCCgcgggGCCCCgCCCCCcuAAACu -3' miRNA: 3'- gCUUUaaaGG-----CGGGG-GGGGGuuUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 7266 | 0.67 | 0.979377 |
Target: 5'- ----uUUUCCcccucCCCCCCCCCAu---- -3' miRNA: 3'- gcuuuAAAGGc----GGGGGGGGGUuuuug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 124398 | 0.67 | 0.979377 |
Target: 5'- aGAGGgggCCgcgggGCCCCgCCCCCcuAAACu -3' miRNA: 3'- gCUUUaaaGG-----CGGGG-GGGGGuuUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 97270 | 0.67 | 0.978909 |
Target: 5'- uCGAGcgccagcagCCGCUCCCCCCaCGAGu-- -3' miRNA: 3'- -GCUUuaaa-----GGCGGGGGGGG-GUUUuug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 99851 | 0.67 | 0.976956 |
Target: 5'- -------cCCGCCCCCgCCCAc---- -3' miRNA: 3'- gcuuuaaaGGCGGGGGgGGGUuuuug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 109037 | 0.67 | 0.976956 |
Target: 5'- gGAAGgg-CCGCCaCgCCCCUCAAAc-- -3' miRNA: 3'- gCUUUaaaGGCGG-G-GGGGGGUUUuug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 135138 | 0.67 | 0.976956 |
Target: 5'- ------cUCCGCgCCCCCCgCgCGGGGGCu -3' miRNA: 3'- gcuuuaaAGGCG-GGGGGG-G-GUUUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 117079 | 0.67 | 0.976956 |
Target: 5'- ------cUCCGCCCUccccgUCCCCAaccGAGACg -3' miRNA: 3'- gcuuuaaAGGCGGGG-----GGGGGU---UUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 29779 | 0.67 | 0.976956 |
Target: 5'- aGAGGg--CCGCCCCggCCCGGcgGCg -3' miRNA: 3'- gCUUUaaaGGCGGGGggGGGUUuuUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 101283 | 0.67 | 0.976956 |
Target: 5'- -------aCUGCCCgCCCCCCAGcccGCg -3' miRNA: 3'- gcuuuaaaGGCGGG-GGGGGGUUuu-UG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 132592 | 0.67 | 0.976956 |
Target: 5'- aGAGGg--CCGCCCCggCCCGGcgGCg -3' miRNA: 3'- gCUUUaaaGGCGGGGggGGGUUuuUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 73827 | 0.67 | 0.976703 |
Target: 5'- -------cCCGCCCCgCCCCGcgcacccgcgcaaAAAACg -3' miRNA: 3'- gcuuuaaaGGCGGGGgGGGGU-------------UUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 97131 | 0.67 | 0.975407 |
Target: 5'- gCGuguagUCCGCCaCCguggccacccgggccUCCCCAAAGACa -3' miRNA: 3'- -GCuuuaaAGGCGG-GG---------------GGGGGUUUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 129880 | 0.67 | 0.974333 |
Target: 5'- uGGAcUUUCgccucaagCGCCCCCUCCCccgcGGAGACc -3' miRNA: 3'- gCUUuAAAG--------GCGGGGGGGGG----UUUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 126170 | 0.67 | 0.974333 |
Target: 5'- ------gUCUGCCCgCCCCCGGGc-- -3' miRNA: 3'- gcuuuaaAGGCGGGgGGGGGUUUuug -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 105221 | 0.67 | 0.974333 |
Target: 5'- aGAG----UCGUCCUCCCCCGAGGGg -3' miRNA: 3'- gCUUuaaaGGCGGGGGGGGGUUUUUg -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 72206 | 0.67 | 0.974333 |
Target: 5'- cCGGA---UCUGCCCCCCgaCgAGGAGCc -3' miRNA: 3'- -GCUUuaaAGGCGGGGGGg-GgUUUUUG- -5' |
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6482 | 3' | -51.2 | NC_001847.1 | + | 54295 | 0.67 | 0.974333 |
Target: 5'- uCGAcgcgcgCCGCCgcccggaucugCCCCCCCAAGucGCg -3' miRNA: 3'- -GCUuuaaa-GGCGG-----------GGGGGGGUUUu-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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