miRNA display CGI


Results 61 - 80 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 14328 0.67 0.347967
Target:  5'- ---cUCGCGGuGGGGCCgggCGUggugGCGGCGCc -3'
miRNA:   3'- ccccAGCGUC-CCCCGG---GCG----CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 14793 0.66 0.415953
Target:  5'- cGGcGUacaaaacCGCAGcGGcGGagCUGCGCGGCGCc -3'
miRNA:   3'- cCC-CA-------GCGUC-CC-CCg-GGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 15011 0.69 0.257884
Target:  5'- -cGGcCGCGGuGGGG-CCGCGCGaGcCGCg -3'
miRNA:   3'- ccCCaGCGUC-CCCCgGGCGCGC-C-GCG- -5'
6482 5' -67.7 NC_001847.1 + 15111 0.68 0.299683
Target:  5'- gGGcGGUCGgGGGaGGGCcuaggccgcucacCCGgGCaGCGCg -3'
miRNA:   3'- -CC-CCAGCgUCC-CCCG-------------GGCgCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 15335 0.69 0.263633
Target:  5'- cGGGGgcggGCGGGGGGUgCGUGaUGGCu- -3'
miRNA:   3'- -CCCCag--CGUCCCCCGgGCGC-GCCGcg -5'
6482 5' -67.7 NC_001847.1 + 15473 0.66 0.392137
Target:  5'- cGGGUCcUGGGGGGCcgccguugcccucCCGCcCGGCuGCc -3'
miRNA:   3'- cCCCAGcGUCCCCCG-------------GGCGcGCCG-CG- -5'
6482 5' -67.7 NC_001847.1 + 15528 0.68 0.275443
Target:  5'- cGGGaGcCGCGGGcugcuGGcGCCgGUGCGcGCGCg -3'
miRNA:   3'- -CCC-CaGCGUCC-----CC-CGGgCGCGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 16283 0.67 0.350847
Target:  5'- cGGGUaCGCcGGcGGGUcgacguauaccgucaCC-CGCGGCGCg -3'
miRNA:   3'- cCCCA-GCGuCC-CCCG---------------GGcGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 16577 0.66 0.400767
Target:  5'- cGGGa--CAGcGGGGUCgGgGCGGCGUg -3'
miRNA:   3'- cCCCagcGUC-CCCCGGgCgCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 16629 0.76 0.08283
Target:  5'- gGGGGgggCGCGGcggcuuugccgucGGGGcCCCGCGCcuacaGGCGCg -3'
miRNA:   3'- -CCCCa--GCGUC-------------CCCC-GGGCGCG-----CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 16641 0.66 0.400767
Target:  5'- cGGGGUUGCucuuGGCgaaCGUgGCGGCGCg -3'
miRNA:   3'- -CCCCAGCGucccCCGg--GCG-CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 16846 0.66 0.37752
Target:  5'- uGGcGGU-GCAGGuguagucgacGGGCCCGUcgguuguagaaaGCaGGCGCa -3'
miRNA:   3'- -CC-CCAgCGUCC----------CCCGGGCG------------CG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 17489 0.67 0.333822
Target:  5'- aGGGGcaagUUGC-GGGGGUCgGCG-GGCGa -3'
miRNA:   3'- -CCCC----AGCGuCCCCCGGgCGCgCCGCg -5'
6482 5' -67.7 NC_001847.1 + 17801 0.67 0.35447
Target:  5'- cGGGcCccagcggGCGGGaGGGCgCCaugccaGUGCGGCGCa -3'
miRNA:   3'- cCCCaG-------CGUCC-CCCG-GG------CGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 17806 0.67 0.345818
Target:  5'- -cGGcCGCGGGGGGCgaggccgccccccgCCGCuaGGuCGCc -3'
miRNA:   3'- ccCCaGCGUCCCCCG--------------GGCGcgCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 17874 0.7 0.230665
Target:  5'- cGGGUCGCccguccucgGGcGGGGCggGCgGCGGCGUg -3'
miRNA:   3'- cCCCAGCG---------UC-CCCCGggCG-CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 18017 0.69 0.257884
Target:  5'- uGGG-CGUGGGGGGCgUUGCGcCGGUGg -3'
miRNA:   3'- cCCCaGCGUCCCCCG-GGCGC-GCCGCg -5'
6482 5' -67.7 NC_001847.1 + 18560 0.68 0.313404
Target:  5'- cGGGGcUCGguGaccGGCCCGUGUGccGCGCc -3'
miRNA:   3'- -CCCC-AGCguCcc-CCGGGCGCGC--CGCG- -5'
6482 5' -67.7 NC_001847.1 + 18856 0.71 0.17927
Target:  5'- cGGGUCaGCGGGGcacgcuGCCuCGCcgaGCGGCGCc -3'
miRNA:   3'- cCCCAG-CGUCCCc-----CGG-GCG---CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 19623 0.7 0.220474
Target:  5'- cGGGcC-CGGGGcGCCgGCGuCGGCGCg -3'
miRNA:   3'- cCCCaGcGUCCCcCGGgCGC-GCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.