miRNA display CGI


Results 41 - 60 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 10378 0.66 0.376761
Target:  5'- cGGGUCGCcgcucgcggcGGGGccgcuuuaugacGGCCCgucccccGCGCGGUucGCg -3'
miRNA:   3'- cCCCAGCG----------UCCC------------CCGGG-------CGCGCCG--CG- -5'
6482 5' -67.7 NC_001847.1 + 10693 0.71 0.183487
Target:  5'- -cGGUCGCGcccGGGcgcGGCCCGCGcCGGCcaaGCg -3'
miRNA:   3'- ccCCAGCGU---CCC---CCGGGCGC-GCCG---CG- -5'
6482 5' -67.7 NC_001847.1 + 10743 0.66 0.369975
Target:  5'- aGGGGg-GC--GGGGCCC-CGCGGCc- -3'
miRNA:   3'- -CCCCagCGucCCCCGGGcGCGCCGcg -5'
6482 5' -67.7 NC_001847.1 + 11183 0.68 0.275443
Target:  5'- uGGGGcUGCcGcuGGUCCGCGCGGgGCu -3'
miRNA:   3'- -CCCCaGCGuCccCCGGGCGCGCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 11331 0.66 0.367732
Target:  5'- cGGGcGgcuggCGCcggAGcGGGaGCacucguacgcgcggCCGCGCGGCGCg -3'
miRNA:   3'- -CCC-Ca----GCG---UC-CCC-CG--------------GGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 11895 0.74 0.119741
Target:  5'- -uGGU-GCGGccGGGGUCCGCGCuGGCGCg -3'
miRNA:   3'- ccCCAgCGUC--CCCCGGGCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 12052 0.67 0.347967
Target:  5'- gGGGGUUGCuAGcGGGCCCGUcauCGuCGCu -3'
miRNA:   3'- -CCCCAGCG-UCcCCCGGGCGc--GCcGCG- -5'
6482 5' -67.7 NC_001847.1 + 12190 0.74 0.108687
Target:  5'- aGGGGuugaggaugUCGUAGGugcgcuucuGGCuuGCGCGGCGCg -3'
miRNA:   3'- -CCCC---------AGCGUCCc--------CCGggCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 12553 0.73 0.128709
Target:  5'- cGGGaCGCAGGugcgcaacGGGCgCCGCguacGCGGCGCc -3'
miRNA:   3'- cCCCaGCGUCC--------CCCG-GGCG----CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 12968 0.7 0.234324
Target:  5'- gGGGGUgGCccGGucgcuGGuucccucuccucguCCCGCGCGGCGCc -3'
miRNA:   3'- -CCCCAgCGucCC-----CC--------------GGGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 13001 0.75 0.096215
Target:  5'- uGGGG--GUGGGGGGCCUGUGCcgagcaguagacGGCGCa -3'
miRNA:   3'- -CCCCagCGUCCCCCGGGCGCG------------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 13111 0.71 0.175139
Target:  5'- --uGUCGCGGccGGGGCgCGCggGCGGCGCc -3'
miRNA:   3'- cccCAGCGUC--CCCCGgGCG--CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 13426 0.69 0.243415
Target:  5'- ---cUCGCGGagcGGGGCCUGCGCuggcuguaucuagcgGGCGCg -3'
miRNA:   3'- ccccAGCGUC---CCCCGGGCGCG---------------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 13806 0.66 0.369975
Target:  5'- -cGG-CGCAgcgguguacGGGGGCCgGCGUgugacGGUGCg -3'
miRNA:   3'- ccCCaGCGU---------CCCCCGGgCGCG-----CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 13916 0.7 0.225521
Target:  5'- uGGaGUUcCGGGaGGCCCGCGaCGGCGUc -3'
miRNA:   3'- cCC-CAGcGUCCcCCGGGCGC-GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 13920 0.67 0.360322
Target:  5'- uGGGGcgcUCggugccgcgccgcgGCAGGGGGgCCGCcCcGCGCa -3'
miRNA:   3'- -CCCC---AG--------------CGUCCCCCgGGCGcGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 14131 0.71 0.192186
Target:  5'- cGGG-CGaugGGcGGGGCCCGCGCcugGGCGg -3'
miRNA:   3'- cCCCaGCg--UC-CCCCGGGCGCG---CCGCg -5'
6482 5' -67.7 NC_001847.1 + 14150 0.67 0.340842
Target:  5'- cGGcugCGCAGcGGcGGCCgGgGCGGcCGCg -3'
miRNA:   3'- cCCca-GCGUC-CC-CCGGgCgCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 14159 0.66 0.400767
Target:  5'- -nGGcCGCuAGGGcgacGGCCgCGCuuacGCGGCGCu -3'
miRNA:   3'- ccCCaGCG-UCCC----CCGG-GCG----CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 14194 0.66 0.406321
Target:  5'- aGGGGcUgGCGGcGGGGCUgGCggucaggccggccgGgGGCGUg -3'
miRNA:   3'- -CCCC-AgCGUC-CCCCGGgCG--------------CgCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.