miRNA display CGI


Results 21 - 40 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 3917 0.68 0.306812
Target:  5'- cGGG-CGCcGGuugcGcGCCCGCGCuGGCGCc -3'
miRNA:   3'- cCCCaGCGuCCc---C-CGGGCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 3949 0.66 0.400767
Target:  5'- -cGG-CGgGGGGGGCgCCGUcuccgGCGGCGn -3'
miRNA:   3'- ccCCaGCgUCCCCCG-GGCG-----CGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 3978 0.76 0.083034
Target:  5'- aGGG-CGCcGGGGGCCgggCGCGCGGCcccGCg -3'
miRNA:   3'- cCCCaGCGuCCCCCGG---GCGCGCCG---CG- -5'
6482 5' -67.7 NC_001847.1 + 4008 0.67 0.362535
Target:  5'- cGGGG-CGcCGGGcccGGcGCCCGCcucucGCGGgGCc -3'
miRNA:   3'- -CCCCaGC-GUCC---CC-CGGGCG-----CGCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 4199 0.67 0.32691
Target:  5'- uGGGccgcgCGCAGGcagccaaaGCCCuGCGCGGUGCc -3'
miRNA:   3'- cCCCa----GCGUCCcc------CGGG-CGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 4625 0.75 0.103526
Target:  5'- -cGG-CGCGGGcGGCCCGC-CGGCGCu -3'
miRNA:   3'- ccCCaGCGUCCcCCGGGCGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 4862 0.69 0.269486
Target:  5'- aGGGGagGgGGGGGGgCgGCG-GGCaGCg -3'
miRNA:   3'- -CCCCagCgUCCCCCgGgCGCgCCG-CG- -5'
6482 5' -67.7 NC_001847.1 + 4974 0.68 0.275443
Target:  5'- cGGGGggGCAGcuGGGGUgCG-GCGGcCGCg -3'
miRNA:   3'- -CCCCagCGUC--CCCCGgGCgCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 5079 0.66 0.37752
Target:  5'- cGGGa-GCGGGcGGCa-GUGCGGCGCc -3'
miRNA:   3'- cCCCagCGUCCcCCGggCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 5223 0.67 0.32691
Target:  5'- cGGcGG-C-CGGcGGGGCgCGCGCGGCa- -3'
miRNA:   3'- -CC-CCaGcGUC-CCCCGgGCGCGCCGcg -5'
6482 5' -67.7 NC_001847.1 + 5522 0.68 0.306812
Target:  5'- cGGGGUCuaGGGcGGcgacGCUCGUGaCGGCGg -3'
miRNA:   3'- -CCCCAGcgUCC-CC----CGGGCGC-GCCGCg -5'
6482 5' -67.7 NC_001847.1 + 5732 0.71 0.175139
Target:  5'- cGGGcGUCGCaucAGGGGacGCaCCGCcgucCGGCGCg -3'
miRNA:   3'- -CCC-CAGCG---UCCCC--CG-GGCGc---GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 6495 0.67 0.32691
Target:  5'- -aGGUCGUAGGuagcGGCgUCGC-CGGCGCg -3'
miRNA:   3'- ccCCAGCGUCCc---CCG-GGCGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 6842 0.67 0.340842
Target:  5'- gGGGaGUUGgGGGGGG---GgGCGGCGCu -3'
miRNA:   3'- -CCC-CAGCgUCCCCCgggCgCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 6962 0.73 0.128709
Target:  5'- cGGGGUCGCGGcGGcgcuuccGCCCGCG-GGcCGCc -3'
miRNA:   3'- -CCCCAGCGUC-CCc------CGGGCGCgCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 7427 0.66 0.400767
Target:  5'- gGGGGggGgGGGGGGCguacUUGCaGCGGCccGCa -3'
miRNA:   3'- -CCCCagCgUCCCCCG----GGCG-CGCCG--CG- -5'
6482 5' -67.7 NC_001847.1 + 8064 0.69 0.269486
Target:  5'- cGGcccgCGCgcagaGGGGGGCaCCGcCGCGGCGa -3'
miRNA:   3'- cCCca--GCG-----UCCCCCG-GGC-GCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 8455 0.72 0.151733
Target:  5'- cGGGUCGgAGGcggcgccGGGCCgGgGgCGGCGCu -3'
miRNA:   3'- cCCCAGCgUCC-------CCCGGgCgC-GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 10111 0.66 0.416762
Target:  5'- cGGGGaaagccgccuUCGCGGcgagcGGGCCCGgcCGUaGCGCg -3'
miRNA:   3'- -CCCC----------AGCGUCc----CCCGGGC--GCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 10213 0.66 0.400767
Target:  5'- cGGGcC-CAGGGcGcGCCCGCugucgccccCGGCGCg -3'
miRNA:   3'- cCCCaGcGUCCC-C-CGGGCGc--------GCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.