miRNA display CGI


Results 21 - 40 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 27797 0.66 0.385167
Target:  5'- cGGGU-GCGGGcucuGGCCauuCGCGCcccGGCGCa -3'
miRNA:   3'- cCCCAgCGUCCc---CCGG---GCGCG---CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 16846 0.66 0.37752
Target:  5'- uGGcGGU-GCAGGuguagucgacGGGCCCGUcgguuguagaaaGCaGGCGCa -3'
miRNA:   3'- -CC-CCAgCGUCC----------CCCGGGCG------------CG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 106107 0.66 0.385167
Target:  5'- -cGGcgCGCAGcucGGCgaGCGCGGCGCg -3'
miRNA:   3'- ccCCa-GCGUCcc-CCGggCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 28693 0.66 0.37752
Target:  5'- cGGcGG-CGCuGGccuaccGGGaCCCcuuuguGCGCGGCGCg -3'
miRNA:   3'- -CC-CCaGCGuCC------CCC-GGG------CGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 16 0.66 0.398401
Target:  5'- cGGGGggCGCGGaGaaaaaaaaaauuuuuUCCGCGCGGCGCg -3'
miRNA:   3'- -CCCCa-GCGUCcCcc-------------GGGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 10378 0.66 0.376761
Target:  5'- cGGGUCGCcgcucgcggcGGGGccgcuuuaugacGGCCCgucccccGCGCGGUucGCg -3'
miRNA:   3'- cCCCAGCG----------UCCC------------CCGGG-------CGCGCCG--CG- -5'
6482 5' -67.7 NC_001847.1 + 90765 0.66 0.37752
Target:  5'- --cGUCGCGGaacGCCUGCGCGGCGa -3'
miRNA:   3'- cccCAGCGUCcccCGGGCGCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 61940 0.66 0.385167
Target:  5'- --cGUCaGCGGcGGcgcGGCCCGCGCGG-GCc -3'
miRNA:   3'- cccCAG-CGUC-CC---CCGGGCGCGCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 114107 0.66 0.408715
Target:  5'- gGGGGUCuCGGGGcaagcuuGCUCGCaCGcGCGCu -3'
miRNA:   3'- -CCCCAGcGUCCCc------CGGGCGcGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 33630 0.66 0.385167
Target:  5'- cGGG-CGCGGcGGcugaccgcgaGGCgCGCGCGcGCGUg -3'
miRNA:   3'- cCCCaGCGUC-CC----------CCGgGCGCGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 85620 0.66 0.369975
Target:  5'- --cGUagaaGCAGGGGaGcCCCGCgcccggcgaaGCGGCGCc -3'
miRNA:   3'- cccCAg---CGUCCCC-C-GGGCG----------CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 128079 0.66 0.385167
Target:  5'- gGGGGUaUGCccgguaAGGGGGUuaGCaGCGGgGUg -3'
miRNA:   3'- -CCCCA-GCG------UCCCCCGggCG-CGCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 110240 0.66 0.400767
Target:  5'- gGGGGggGgGGGGGGCguacUUGCaGCGGCccGCa -3'
miRNA:   3'- -CCCCagCgUCCCCCG----GGCG-CGCCG--CG- -5'
6482 5' -67.7 NC_001847.1 + 59555 0.66 0.392917
Target:  5'- uGGGGgcgGCGGGGGcgguGCCgGCGgaagcucuggcUGGCGUg -3'
miRNA:   3'- -CCCCag-CGUCCCC----CGGgCGC-----------GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 127169 0.66 0.392917
Target:  5'- gGGGGgcccgaGCAGGGcccuaaaaaCCCGCaUGGCGCg -3'
miRNA:   3'- -CCCCag----CGUCCCcc-------GGGCGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 131160 0.66 0.369975
Target:  5'- cGGGGcCGCGcgcccGGGCCC-C-CGGCGCc -3'
miRNA:   3'- -CCCCaGCGUcc---CCCGGGcGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 80751 0.66 0.408715
Target:  5'- --cGUCGUGGacuuGGUCCGCGcCGGCGCg -3'
miRNA:   3'- cccCAGCGUCcc--CCGGGCGC-GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 11331 0.66 0.367732
Target:  5'- cGGGcGgcuggCGCcggAGcGGGaGCacucguacgcgcggCCGCGCGGCGCg -3'
miRNA:   3'- -CCC-Ca----GCG---UC-CCC-CG--------------GGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 132271 0.66 0.385167
Target:  5'- -cGG-CGC-GGcGGCCCGCGCgucggccugGGCGCu -3'
miRNA:   3'- ccCCaGCGuCCcCCGGGCGCG---------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 133790 0.66 0.369975
Target:  5'- cGGG-CGCaAGGacauGGCCgcgcaggGCGCGGCGCu -3'
miRNA:   3'- cCCCaGCG-UCCc---CCGGg------CGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.