miRNA display CGI


Results 1 - 20 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 27797 0.66 0.385167
Target:  5'- cGGGU-GCGGGcucuGGCCauuCGCGCcccGGCGCa -3'
miRNA:   3'- cCCCAgCGUCCc---CCGG---GCGCG---CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 35178 0.66 0.37752
Target:  5'- cGGGGgcaCGCggccuucgAGGaGGaGCgCGCGCGGCuggGCg -3'
miRNA:   3'- -CCCCa--GCG--------UCC-CC-CGgGCGCGCCG---CG- -5'
6482 5' -67.7 NC_001847.1 + 103572 0.66 0.369975
Target:  5'- aGGG-CG-AGGccGGCCCGCcgccgGCGGCGCc -3'
miRNA:   3'- cCCCaGCgUCCc-CCGGGCG-----CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 107892 0.66 0.37752
Target:  5'- cGGGa-GCGGGcGGCa-GUGCGGCGCc -3'
miRNA:   3'- cCCCagCGUCCcCCGggCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 131160 0.66 0.369975
Target:  5'- cGGGGcCGCGcgcccGGGCCC-C-CGGCGCc -3'
miRNA:   3'- -CCCCaGCGUcc---CCCGGGcGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 84235 0.66 0.369975
Target:  5'- cGGGGcCGCcgcGGGGGaggaGgGCGGCGa -3'
miRNA:   3'- -CCCCaGCGu--CCCCCggg-CgCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 85620 0.66 0.369975
Target:  5'- --cGUagaaGCAGGGGaGcCCCGCgcccggcgaaGCGGCGCc -3'
miRNA:   3'- cccCAg---CGUCCCC-C-GGGCG----------CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 10378 0.66 0.376761
Target:  5'- cGGGUCGCcgcucgcggcGGGGccgcuuuaugacGGCCCgucccccGCGCGGUucGCg -3'
miRNA:   3'- cCCCAGCG----------UCCC------------CCGGG-------CGCGCCG--CG- -5'
6482 5' -67.7 NC_001847.1 + 132198 0.66 0.369975
Target:  5'- aGGcGGcCGCcgcgcuggAGGcGGCCgCGCugGCGGCGCg -3'
miRNA:   3'- -CC-CCaGCG--------UCCcCCGG-GCG--CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 105569 0.66 0.37752
Target:  5'- -cGG-CGCGGcGGcGCCgGCGCcGGCGCc -3'
miRNA:   3'- ccCCaGCGUCcCC-CGGgCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 34657 0.66 0.369975
Target:  5'- -cGGcgCGCcgAGGGGGCggCCGCGCaGCGg -3'
miRNA:   3'- ccCCa-GCG--UCCCCCG--GGCGCGcCGCg -5'
6482 5' -67.7 NC_001847.1 + 61940 0.66 0.385167
Target:  5'- --cGUCaGCGGcGGcgcGGCCCGCGCGG-GCc -3'
miRNA:   3'- cccCAG-CGUC-CC---CCGGGCGCGCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 90765 0.66 0.37752
Target:  5'- --cGUCGCGGaacGCCUGCGCGGCGa -3'
miRNA:   3'- cccCAGCGUCcccCGGGCGCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 133790 0.66 0.369975
Target:  5'- cGGG-CGCaAGGacauGGCCgcgcaggGCGCGGCGCu -3'
miRNA:   3'- cCCCaGCG-UCCc---CCGGg------CGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 16846 0.66 0.37752
Target:  5'- uGGcGGU-GCAGGuguagucgacGGGCCCGUcgguuguagaaaGCaGGCGCa -3'
miRNA:   3'- -CC-CCAgCGUCC----------CCCGGGCG------------CG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 28693 0.66 0.37752
Target:  5'- cGGcGG-CGCuGGccuaccGGGaCCCcuuuguGCGCGGCGCg -3'
miRNA:   3'- -CC-CCaGCGuCC------CCC-GGG------CGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 11331 0.66 0.367732
Target:  5'- cGGGcGgcuggCGCcggAGcGGGaGCacucguacgcgcggCCGCGCGGCGCg -3'
miRNA:   3'- -CCC-Ca----GCG---UC-CCC-CG--------------GGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 63418 0.66 0.37752
Target:  5'- cGGGagCGCAcgcggcgccGGcGGGCCgGCGCaccGCGCa -3'
miRNA:   3'- cCCCa-GCGU---------CC-CCCGGgCGCGc--CGCG- -5'
6482 5' -67.7 NC_001847.1 + 113556 0.66 0.369975
Target:  5'- aGGGGg-GC--GGGGCCC-CGCGGCc- -3'
miRNA:   3'- -CCCCagCGucCCCCGGGcGCGCCGcg -5'
6482 5' -67.7 NC_001847.1 + 13806 0.66 0.369975
Target:  5'- -cGG-CGCAgcgguguacGGGGGCCgGCGUgugacGGUGCg -3'
miRNA:   3'- ccCCaGCGU---------CCCCCGGgCGCG-----CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.