miRNA display CGI


Results 21 - 40 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 16629 0.76 0.08283
Target:  5'- gGGGGgggCGCGGcggcuuugccgucGGGGcCCCGCGCcuacaGGCGCg -3'
miRNA:   3'- -CCCCa--GCGUC-------------CCCC-GGGCGCG-----CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 3978 0.76 0.083034
Target:  5'- aGGG-CGCcGGGGGCCgggCGCGCGGCcccGCg -3'
miRNA:   3'- cCCCaGCGuCCCCCGG---GCGCGCCG---CG- -5'
6482 5' -67.7 NC_001847.1 + 40890 0.76 0.083856
Target:  5'- -uGGaCGCAGGGcgcgagccgcuccacGGCCCGCGCgGGCGCc -3'
miRNA:   3'- ccCCaGCGUCCC---------------CCGGGCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 36958 0.76 0.085104
Target:  5'- cGGGGgcugcggccagCGCGGGcgccggcgagcGGGCCCGCGCcgagcggcggcGGCGCg -3'
miRNA:   3'- -CCCCa----------GCGUCC-----------CCCGGGCGCG-----------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 13001 0.75 0.096215
Target:  5'- uGGGG--GUGGGGGGCCUGUGCcgagcaguagacGGCGCa -3'
miRNA:   3'- -CCCCagCGUCCCCCGGGCGCG------------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 98781 0.75 0.096215
Target:  5'- cGGGcCGC-GGcGGCgCCGCGUGGCGCg -3'
miRNA:   3'- cCCCaGCGuCCcCCG-GGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 96811 0.75 0.096215
Target:  5'- gGGGGgcgCGCAGcGGcGGCgaCCGCGCgGGCGUu -3'
miRNA:   3'- -CCCCa--GCGUC-CC-CCG--GGCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 88364 0.75 0.098596
Target:  5'- aGGGGcgCGCGGGcgcggcggaccGGcCCCGCGCGGCGg -3'
miRNA:   3'- -CCCCa-GCGUCC-----------CCcGGGCGCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 102223 0.75 0.099564
Target:  5'- cGGGUCGuCGGGcGGGacggcguccaggcgcUCgCGCGCGGCGCg -3'
miRNA:   3'- cCCCAGC-GUCC-CCC---------------GG-GCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 42249 0.75 0.102023
Target:  5'- uGGcGUCGguGGuGGGCagcagcaccucgagcUCGCGCGGCGCc -3'
miRNA:   3'- cCC-CAGCguCC-CCCG---------------GGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 107438 0.75 0.103526
Target:  5'- -cGG-CGCGGGcGGCCCGC-CGGCGCu -3'
miRNA:   3'- ccCCaGCGUCCcCCGGGCGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 47557 0.75 0.103526
Target:  5'- cGGG-CGCGGGGaGCCCG-GCGGcCGCg -3'
miRNA:   3'- cCCCaGCGUCCCcCGGGCgCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 4625 0.75 0.103526
Target:  5'- -cGG-CGCGGGcGGCCCGC-CGGCGCu -3'
miRNA:   3'- ccCCaGCGUCCcCCGGGCGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 74238 0.75 0.105305
Target:  5'- cGGGGaCGCGguaugccuGcugccgccgcugcuGGGGCCCGCGCGcGCGCu -3'
miRNA:   3'- -CCCCaGCGU--------C--------------CCCCGGGCGCGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 27862 0.75 0.106077
Target:  5'- aGGGaCGCGGGGGGCgCCGaggaCGCGGaCGUc -3'
miRNA:   3'- cCCCaGCGUCCCCCG-GGC----GCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 130675 0.75 0.106077
Target:  5'- aGGGaCGCGGGGGGCgCCGaggaCGCGGaCGUc -3'
miRNA:   3'- cCCCaGCGUCCCCCG-GGC----GCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 12190 0.74 0.108687
Target:  5'- aGGGGuugaggaugUCGUAGGugcgcuucuGGCuuGCGCGGCGCg -3'
miRNA:   3'- -CCCC---------AGCGUCCc--------CCGggCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 103112 0.74 0.111357
Target:  5'- ---uUCGCGGGGGcuucCCCGCGCGaGCGCg -3'
miRNA:   3'- ccccAGCGUCCCCc---GGGCGCGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 33786 0.74 0.111357
Target:  5'- aGGGcuUCGC--GGGGCUgCGCGCGGCGCc -3'
miRNA:   3'- cCCC--AGCGucCCCCGG-GCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 116443 0.74 0.111357
Target:  5'- aGGG-CGguGGGcgcuGGCgCaCGCGCGGCGCg -3'
miRNA:   3'- cCCCaGCguCCC----CCG-G-GCGCGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.