miRNA display CGI


Results 21 - 40 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 114107 0.66 0.408715
Target:  5'- gGGGGUCuCGGGGcaagcuuGCUCGCaCGcGCGCu -3'
miRNA:   3'- -CCCCAGcGUCCCc------CGGGCGcGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 80751 0.66 0.408715
Target:  5'- --cGUCGUGGacuuGGUCCGCGcCGGCGCg -3'
miRNA:   3'- cccCAGCGUCcc--CCGGGCGC-GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 130727 0.66 0.408715
Target:  5'- aGGGGgcggaggCGCGGaGGacgcggacagcGCCUGggcCGCGGCGCg -3'
miRNA:   3'- -CCCCa------GCGUCcCC-----------CGGGC---GCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 75469 0.66 0.407916
Target:  5'- cGGGGg---GGaGGGGCCagaGCGCacgggcgGGCGCg -3'
miRNA:   3'- -CCCCagcgUC-CCCCGGg--CGCG-------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 91876 0.66 0.407118
Target:  5'- cGGcGUCGCAGcaggugccccccGGGCgCCGCGCcgcccGCGCg -3'
miRNA:   3'- cCC-CAGCGUCc-----------CCCG-GGCGCGc----CGCG- -5'
6482 5' -67.7 NC_001847.1 + 14194 0.66 0.406321
Target:  5'- aGGGGcUgGCGGcGGGGCUgGCggucaggccggccgGgGGCGUg -3'
miRNA:   3'- -CCCC-AgCGUC-CCCCGGgCG--------------CgCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 16641 0.66 0.400767
Target:  5'- cGGGGUUGCucuuGGCgaaCGUgGCGGCGCg -3'
miRNA:   3'- -CCCCAGCGucccCCGg--GCG-CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 20067 0.66 0.400767
Target:  5'- cGGGa-GCGGcguGGcGGCUCcCGCGGCGCg -3'
miRNA:   3'- cCCCagCGUC---CC-CCGGGcGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 7427 0.66 0.400767
Target:  5'- gGGGGggGgGGGGGGCguacUUGCaGCGGCccGCa -3'
miRNA:   3'- -CCCCagCgUCCCCCG----GGCG-CGCCG--CG- -5'
6482 5' -67.7 NC_001847.1 + 10213 0.66 0.400767
Target:  5'- cGGGcC-CAGGGcGcGCCCGCugucgccccCGGCGCg -3'
miRNA:   3'- cCCCaGcGUCCC-C-CGGGCGc--------GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 3949 0.66 0.400767
Target:  5'- -cGG-CGgGGGGGGCgCCGUcuccgGCGGCGn -3'
miRNA:   3'- ccCCaGCgUCCCCCG-GGCG-----CGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 16577 0.66 0.400767
Target:  5'- cGGGa--CAGcGGGGUCgGgGCGGCGUg -3'
miRNA:   3'- cCCCagcGUC-CCCCGGgCgCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 55455 0.66 0.400767
Target:  5'- -uGG-CGcCGGcGGGGCgCGCGCcGCGCu -3'
miRNA:   3'- ccCCaGC-GUC-CCCCGgGCGCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 113026 0.66 0.400767
Target:  5'- cGGGcC-CAGGGcGcGCCCGCugucgccccCGGCGCg -3'
miRNA:   3'- cCCCaGcGUCCC-C-CGGGCGc--------GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 92258 0.66 0.400767
Target:  5'- --aGUCGCAaaGGcGCCCacuaGCGUGGCGCg -3'
miRNA:   3'- cccCAGCGUccCC-CGGG----CGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 14159 0.66 0.400767
Target:  5'- -nGGcCGCuAGGGcgacGGCCgCGCuuacGCGGCGCu -3'
miRNA:   3'- ccCCaGCG-UCCC----CCGG-GCG----CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 110240 0.66 0.400767
Target:  5'- gGGGGggGgGGGGGGCguacUUGCaGCGGCccGCa -3'
miRNA:   3'- -CCCCagCgUCCCCCG----GGCG-CGCCG--CG- -5'
6482 5' -67.7 NC_001847.1 + 54391 0.66 0.400767
Target:  5'- gGGcGGcCGCGGGcgaggcGGGCgCCGCcGCGGUugGCc -3'
miRNA:   3'- -CC-CCaGCGUCC------CCCG-GGCG-CGCCG--CG- -5'
6482 5' -67.7 NC_001847.1 + 123135 0.66 0.400767
Target:  5'- aGGGG-CGCuGGaacGGGUgCGUGCGGUa- -3'
miRNA:   3'- -CCCCaGCGuCC---CCCGgGCGCGCCGcg -5'
6482 5' -67.7 NC_001847.1 + 88892 0.66 0.399977
Target:  5'- cGGcGGcuccCGCcGGGGGCggcucccUUGCGCGcGCGCg -3'
miRNA:   3'- -CC-CCa---GCGuCCCCCG-------GGCGCGC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.