miRNA display CGI


Results 41 - 60 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 88892 0.66 0.399977
Target:  5'- cGGcGGcuccCGCcGGGGGCggcucccUUGCGCGcGCGCg -3'
miRNA:   3'- -CC-CCa---GCGuCCCCCG-------GGCGCGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 23832 0.66 0.399977
Target:  5'- aGGGGgcccaCGUAaGGGGCCCcgcccccggccgaGCGCcgcccccggcccGGCGCc -3'
miRNA:   3'- -CCCCa----GCGUcCCCCGGG-------------CGCG------------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 16 0.66 0.398401
Target:  5'- cGGGGggCGCGGaGaaaaaaaaaauuuuuUCCGCGCGGCGCg -3'
miRNA:   3'- -CCCCa-GCGUCcCcc-------------GGGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 127169 0.66 0.392917
Target:  5'- gGGGGgcccgaGCAGGGcccuaaaaaCCCGCaUGGCGCg -3'
miRNA:   3'- -CCCCag----CGUCCCcc-------GGGCGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 134153 0.66 0.392917
Target:  5'- uGGGGgcagaaggUGCGuGcGGGCCgGCGCauagacgcccGGCGCa -3'
miRNA:   3'- -CCCCa-------GCGUcC-CCCGGgCGCG----------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 26952 0.66 0.392917
Target:  5'- cGGcGGUCGCcGGaguuggaaaugaGGuGCgCGCGCaGCGCg -3'
miRNA:   3'- -CC-CCAGCGuCC------------CC-CGgGCGCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 99810 0.66 0.392917
Target:  5'- cGGGGUCGgAgcggccGGGGGCCgcuuaGUGCuuuGCGUu -3'
miRNA:   3'- -CCCCAGCgU------CCCCCGGg----CGCGc--CGCG- -5'
6482 5' -67.7 NC_001847.1 + 130207 0.66 0.392917
Target:  5'- cGGGcggCGCGGaGGGCgCgggaaGCGCGGCGg -3'
miRNA:   3'- cCCCa--GCGUCcCCCGgG-----CGCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 102459 0.66 0.392917
Target:  5'- cGGcGcCGCacagcucgAGcGGGCCCGCGCcgccGGCGCc -3'
miRNA:   3'- cCC-CaGCG--------UCcCCCGGGCGCG----CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 24356 0.66 0.392917
Target:  5'- gGGGGgcccgaGCAGGGcccuaaaaaCCCGCaUGGCGCg -3'
miRNA:   3'- -CCCCag----CGUCCCcc-------GGGCGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 45149 0.66 0.392917
Target:  5'- ----cUGCGGGGugcaGCCC-CGCGGCGCg -3'
miRNA:   3'- ccccaGCGUCCCc---CGGGcGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 59555 0.66 0.392917
Target:  5'- uGGGGgcgGCGGGGGcgguGCCgGCGgaagcucuggcUGGCGUg -3'
miRNA:   3'- -CCCCag-CGUCCCC----CGGgCGC-----------GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 15473 0.66 0.392137
Target:  5'- cGGGUCcUGGGGGGCcgccguugcccucCCGCcCGGCuGCc -3'
miRNA:   3'- cCCCAGcGUCCCCCG-------------GGCGcGCCG-CG- -5'
6482 5' -67.7 NC_001847.1 + 97005 0.66 0.391359
Target:  5'- cGGGUcggcggcgcuggcCGCGGGGGGCa-GCGCGuccucguagucuaGCGUc -3'
miRNA:   3'- cCCCA-------------GCGUCCCCCGggCGCGC-------------CGCG- -5'
6482 5' -67.7 NC_001847.1 + 77333 0.66 0.388255
Target:  5'- cGGGGcacugcgCGCugcuGGGcGGCgacacgccgugcgaCGCGUGGCGCc -3'
miRNA:   3'- -CCCCa------GCGu---CCC-CCGg-------------GCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 106107 0.66 0.385167
Target:  5'- -cGGcgCGCAGcucGGCgaGCGCGGCGCg -3'
miRNA:   3'- ccCCa-GCGUCcc-CCGggCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 61940 0.66 0.385167
Target:  5'- --cGUCaGCGGcGGcgcGGCCCGCGCGG-GCc -3'
miRNA:   3'- cccCAG-CGUC-CC---CCGGGCGCGCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 33630 0.66 0.385167
Target:  5'- cGGG-CGCGGcGGcugaccgcgaGGCgCGCGCGcGCGUg -3'
miRNA:   3'- cCCCaGCGUC-CC----------CCGgGCGCGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 27797 0.66 0.385167
Target:  5'- cGGGU-GCGGGcucuGGCCauuCGCGCcccGGCGCa -3'
miRNA:   3'- cCCCAgCGUCCc---CCGG---GCGCG---CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 128079 0.66 0.385167
Target:  5'- gGGGGUaUGCccgguaAGGGGGUuaGCaGCGGgGUg -3'
miRNA:   3'- -CCCCA-GCG------UCCCCCGggCG-CGCCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.