miRNA display CGI


Results 41 - 60 of 467 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 132271 0.66 0.385167
Target:  5'- -cGG-CGC-GGcGGCCCGCGCgucggccugGGCGCu -3'
miRNA:   3'- ccCCaGCGuCCcCCGGGCGCG---------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 28693 0.66 0.37752
Target:  5'- cGGcGG-CGCuGGccuaccGGGaCCCcuuuguGCGCGGCGCg -3'
miRNA:   3'- -CC-CCaGCGuCC------CCC-GGG------CGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 88892 0.66 0.399977
Target:  5'- cGGcGGcuccCGCcGGGGGCggcucccUUGCGCGcGCGCg -3'
miRNA:   3'- -CC-CCa---GCGuCCCCCG-------GGCGCGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 13806 0.66 0.369975
Target:  5'- -cGG-CGCAgcgguguacGGGGGCCgGCGUgugacGGUGCg -3'
miRNA:   3'- ccCCaGCGU---------CCCCCGGgCGCG-----CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 103572 0.66 0.369975
Target:  5'- aGGG-CG-AGGccGGCCCGCcgccgGCGGCGCc -3'
miRNA:   3'- cCCCaGCgUCCc-CCGGGCG-----CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 127169 0.66 0.392917
Target:  5'- gGGGGgcccgaGCAGGGcccuaaaaaCCCGCaUGGCGCg -3'
miRNA:   3'- -CCCCag----CGUCCCcc-------GGGCGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 11331 0.66 0.367732
Target:  5'- cGGGcGgcuggCGCcggAGcGGGaGCacucguacgcgcggCCGCGCGGCGCg -3'
miRNA:   3'- -CCC-Ca----GCG---UC-CCC-CG--------------GGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 28418 0.66 0.408715
Target:  5'- cGGGcgCGCAaccGGcGCCCGCgcuggcuacgccGCGGCGCc -3'
miRNA:   3'- cCCCa-GCGUcc-CC-CGGGCG------------CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 33842 0.66 0.416762
Target:  5'- uGGGaGUCGCGGcGGGaGagaCCGCG-GGCu- -3'
miRNA:   3'- -CCC-CAGCGUC-CCC-Cg--GGCGCgCCGcg -5'
6482 5' -67.7 NC_001847.1 + 26952 0.66 0.392917
Target:  5'- cGGcGGUCGCcGGaguuggaaaugaGGuGCgCGCGCaGCGCg -3'
miRNA:   3'- -CC-CCAGCGuCC------------CC-CGgGCGCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 51587 0.66 0.408715
Target:  5'- cGGGGcagcCGuCGGGaGGGCagugcuccaccCCgGgGCGGCGCa -3'
miRNA:   3'- -CCCCa---GC-GUCC-CCCG-----------GG-CgCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 114107 0.66 0.408715
Target:  5'- gGGGGUCuCGGGGcaagcuuGCUCGCaCGcGCGCu -3'
miRNA:   3'- -CCCCAGcGUCCCc------CGGGCGcGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 85069 0.66 0.408715
Target:  5'- -uGGcCGCGcccGGGUCCGCGCcGCGCg -3'
miRNA:   3'- ccCCaGCGUcc-CCCGGGCGCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 14159 0.66 0.400767
Target:  5'- -nGGcCGCuAGGGcgacGGCCgCGCuuacGCGGCGCu -3'
miRNA:   3'- ccCCaGCG-UCCC----CCGG-GCG----CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 113026 0.66 0.400767
Target:  5'- cGGGcC-CAGGGcGcGCCCGCugucgccccCGGCGCg -3'
miRNA:   3'- cCCCaGcGUCCC-C-CGGGCGc--------GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 80751 0.66 0.408715
Target:  5'- --cGUCGUGGacuuGGUCCGCGcCGGCGCg -3'
miRNA:   3'- cccCAGCGUCcc--CCGGGCGC-GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 84817 0.66 0.408715
Target:  5'- cGGca-GCccGGGGGCCUGCGU-GCGCa -3'
miRNA:   3'- cCCcagCGu-CCCCCGGGCGCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 131160 0.66 0.369975
Target:  5'- cGGGGcCGCGcgcccGGGCCC-C-CGGCGCc -3'
miRNA:   3'- -CCCCaGCGUcc---CCCGGGcGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 10111 0.66 0.416762
Target:  5'- cGGGGaaagccgccuUCGCGGcgagcGGGCCCGgcCGUaGCGCg -3'
miRNA:   3'- -CCCC----------AGCGUCc----CCCGGGC--GCGcCGCG- -5'
6482 5' -67.7 NC_001847.1 + 99810 0.66 0.392917
Target:  5'- cGGGGUCGgAgcggccGGGGGCCgcuuaGUGCuuuGCGUu -3'
miRNA:   3'- -CCCCAGCgU------CCCCCGGg----CGCGc--CGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.