miRNA display CGI


Results 41 - 60 of 467 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 48829 0.79 0.049232
Target:  5'- cGGGccuugccgCGCGGGGGcGCcucggCCGCGCGGCGCg -3'
miRNA:   3'- cCCCa-------GCGUCCCC-CG-----GGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 104888 0.79 0.049232
Target:  5'- -cGGUgGCGGcgagcgccccgcGGGGCCCGCGCGGCGg -3'
miRNA:   3'- ccCCAgCGUC------------CCCCGGGCGCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 134847 0.79 0.049232
Target:  5'- cGGGG-CGCGGGGacggcGCCCGCGCGG-GCu -3'
miRNA:   3'- -CCCCaGCGUCCCc----CGGGCGCGCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 50045 0.8 0.039254
Target:  5'- cGGGG-CGCGGuGGcGGCCgcggguccgCGCGCGGCGCg -3'
miRNA:   3'- -CCCCaGCGUC-CC-CCGG---------GCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 94218 0.83 0.024255
Target:  5'- cGGcGGagcUCGCGgcGGGGcGCCCGCGCGGCGCc -3'
miRNA:   3'- -CC-CC---AGCGU--CCCC-CGGGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 42249 0.75 0.102023
Target:  5'- uGGcGUCGguGGuGGGCagcagcaccucgagcUCGCGCGGCGCc -3'
miRNA:   3'- cCC-CAGCguCC-CCCG---------------GGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 47557 0.75 0.103526
Target:  5'- cGGG-CGCGGGGaGCCCG-GCGGcCGCg -3'
miRNA:   3'- cCCCaGCGUCCCcCGGGCgCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 27422 0.73 0.138294
Target:  5'- aGGGUUGUAgccccGGGGuGCCCGCccGCGaGCGCc -3'
miRNA:   3'- cCCCAGCGU-----CCCC-CGGGCG--CGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 124570 0.73 0.135028
Target:  5'- ----gCGCGGGGGGgCCGC-CGGCGCc -3'
miRNA:   3'- ccccaGCGUCCCCCgGGCGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 6962 0.73 0.128709
Target:  5'- cGGGGUCGCGGcGGcgcuuccGCCCGCG-GGcCGCc -3'
miRNA:   3'- -CCCCAGCGUC-CCc------CGGGCGCgCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 134393 0.73 0.127785
Target:  5'- cGGGccggccUCGCccuaGGGGGGCCCGCgggaagggagggagGgGGCGCg -3'
miRNA:   3'- cCCC------AGCG----UCCCCCGGGCG--------------CgCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 74387 0.74 0.125652
Target:  5'- -aGG-CGCuGGGGGaCCGCGCGGcCGCc -3'
miRNA:   3'- ccCCaGCGuCCCCCgGGCGCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 100758 0.74 0.125652
Target:  5'- cGGGGUC-CAGGucGcCCCGCGCcauGGCGCu -3'
miRNA:   3'- -CCCCAGcGUCCccC-GGGCGCG---CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 100530 0.74 0.116883
Target:  5'- cGGGUCGCGgagugggugggcGGGGaGCCgGcCGCGGCGa -3'
miRNA:   3'- cCCCAGCGU------------CCCC-CGGgC-GCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 29520 0.74 0.116883
Target:  5'- -cGGcCGCAGaGcucGCCCGCGCGGCGCg -3'
miRNA:   3'- ccCCaGCGUC-Ccc-CGGGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 121191 0.74 0.114089
Target:  5'- cGGGagcggcacuugCGCGGGGcGGCCCcccugcCGCGGCGCg -3'
miRNA:   3'- cCCCa----------GCGUCCC-CCGGGc-----GCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 33786 0.74 0.111357
Target:  5'- aGGGcuUCGC--GGGGCUgCGCGCGGCGCc -3'
miRNA:   3'- cCCC--AGCGucCCCCGG-GCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 130675 0.75 0.106077
Target:  5'- aGGGaCGCGGGGGGCgCCGaggaCGCGGaCGUc -3'
miRNA:   3'- cCCCaGCGUCCCCCG-GGC----GCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 74238 0.75 0.105305
Target:  5'- cGGGGaCGCGguaugccuGcugccgccgcugcuGGGGCCCGCGCGcGCGCu -3'
miRNA:   3'- -CCCCaGCGU--------C--------------CCCCGGGCGCGC-CGCG- -5'
6482 5' -67.7 NC_001847.1 + 107438 0.75 0.103526
Target:  5'- -cGG-CGCGGGcGGCCCGC-CGGCGCu -3'
miRNA:   3'- ccCCaGCGUCCcCCGGGCGcGCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.