miRNA display CGI


Results 21 - 40 of 467 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 132198 0.66 0.369975
Target:  5'- aGGcGGcCGCcgcgcuggAGGcGGCCgCGCugGCGGCGCg -3'
miRNA:   3'- -CC-CCaGCG--------UCCcCCGG-GCG--CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 131480 0.69 0.257884
Target:  5'- gGGGGaCGCGGGGaaGCaguaCGCGGCGCu -3'
miRNA:   3'- -CCCCaGCGUCCCc-CGggc-GCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 131231 0.66 0.408715
Target:  5'- cGGGcgCGCAaccGGcGCCCGCgcuggcuacgccGCGGCGCc -3'
miRNA:   3'- cCCCa-GCGUcc-CC-CGGGCG------------CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 131160 0.66 0.369975
Target:  5'- cGGGGcCGCGcgcccGGGCCC-C-CGGCGCc -3'
miRNA:   3'- -CCCCaGCGUcc---CCCGGGcGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 131115 0.71 0.185199
Target:  5'- cGGGGcgcgcggCGCgguaugcugcucGGGGGGCggacuguuaacuuggCCGCGCuGGCGCu -3'
miRNA:   3'- -CCCCa------GCG------------UCCCCCG---------------GGCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 130894 0.66 0.416762
Target:  5'- cGGGGacugagGCGGGGGGCg---GCGGUGCc -3'
miRNA:   3'- -CCCCag----CGUCCCCCGggcgCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 130783 0.68 0.313404
Target:  5'- -cGGUCGCGGuGGaGGCggCCGCGgcCGGgGCg -3'
miRNA:   3'- ccCCAGCGUC-CC-CCG--GGCGC--GCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 130727 0.66 0.408715
Target:  5'- aGGGGgcggaggCGCGGaGGacgcggacagcGCCUGggcCGCGGCGCg -3'
miRNA:   3'- -CCCCa------GCGUCcCC-----------CGGGC---GCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 130675 0.75 0.106077
Target:  5'- aGGGaCGCGGGGGGCgCCGaggaCGCGGaCGUc -3'
miRNA:   3'- cCCCaGCGUCCCCCG-GGC----GCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 130462 0.69 0.257884
Target:  5'- gGGGGcUCGgAGGaagacccGGCCCugcucgaCGCGGCGCg -3'
miRNA:   3'- -CCCC-AGCgUCCc------CCGGGc------GCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 130210 0.71 0.17473
Target:  5'- -aGGUUGCucgGGGGGGCgcuguugCCGC-CGGCGCg -3'
miRNA:   3'- ccCCAGCG---UCCCCCG-------GGCGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 130207 0.66 0.392917
Target:  5'- cGGGcggCGCGGaGGGCgCgggaaGCGCGGCGg -3'
miRNA:   3'- cCCCa--GCGUCcCCCGgG-----CGCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 129300 0.68 0.306812
Target:  5'- aGGGGcgggccuggUGCaAGGcGGGCCUgccggGCGCGGgGCc -3'
miRNA:   3'- -CCCCa--------GCG-UCC-CCCGGG-----CGCGCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 128781 0.7 0.2126
Target:  5'- gGGGGcCGCGGGcggucagaccagggcGGGCgggcgggCGCGCaGGCGCg -3'
miRNA:   3'- -CCCCaGCGUCC---------------CCCGg------GCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 128079 0.66 0.385167
Target:  5'- gGGGGUaUGCccgguaAGGGGGUuaGCaGCGGgGUg -3'
miRNA:   3'- -CCCCA-GCG------UCCCCCGggCG-CGCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 128025 0.67 0.333822
Target:  5'- cGGG-C-CAGGaGGaGCCCGgcCGUGGCGCc -3'
miRNA:   3'- cCCCaGcGUCC-CC-CGGGC--GCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 127169 0.66 0.392917
Target:  5'- gGGGGgcccgaGCAGGGcccuaaaaaCCCGCaUGGCGCg -3'
miRNA:   3'- -CCCCag----CGUCCCcc-------GGGCGcGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 127037 0.68 0.281506
Target:  5'- -cGGUUGUAcGGGGCCaCGUGgguCGGCGCc -3'
miRNA:   3'- ccCCAGCGUcCCCCGG-GCGC---GCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 126645 0.66 0.399977
Target:  5'- aGGGGgcccaCGUAaGGGGCCCcgcccccggccgaGCGCcgcccccggcccGGCGCc -3'
miRNA:   3'- -CCCCa----GCGUcCCCCGGG-------------CGCG------------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 126229 0.72 0.152093
Target:  5'- cGGGGUCGuCGGcGGGGCguccggggucguCgGCGgGGCGUc -3'
miRNA:   3'- -CCCCAGC-GUC-CCCCG------------GgCGCgCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.