miRNA display CGI


Results 1 - 20 of 467 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6482 5' -67.7 NC_001847.1 + 135129 1.12 0.000162
Target:  5'- cGGGGUCGCAGGGGGCCCGCGCGGCGCg -3'
miRNA:   3'- -CCCCAGCGUCCCCCGGGCGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 135011 0.71 0.187792
Target:  5'- cGGGGcccgaggccCGCGGgcGGGGCCggggCGCGgGGCGCc -3'
miRNA:   3'- -CCCCa--------GCGUC--CCCCGG----GCGCgCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 134915 0.69 0.263633
Target:  5'- cGGGG-CGCgAGGcccGGGCUCGgGCccccgGGCGCc -3'
miRNA:   3'- -CCCCaGCG-UCC---CCCGGGCgCG-----CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 134847 0.79 0.049232
Target:  5'- cGGGG-CGCGGGGacggcGCCCGCGCGG-GCu -3'
miRNA:   3'- -CCCCaGCGUCCCc----CGGGCGCGCCgCG- -5'
6482 5' -67.7 NC_001847.1 + 134779 0.71 0.187792
Target:  5'- -cGGcgCGCGGGGcgGGCCC-CGgGGCGCg -3'
miRNA:   3'- ccCCa-GCGUCCC--CCGGGcGCgCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 134636 0.69 0.269486
Target:  5'- uGGGcUGgGGGcGGGCCgGCaGCaGGCGCg -3'
miRNA:   3'- cCCCaGCgUCC-CCCGGgCG-CG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 134516 0.7 0.21067
Target:  5'- cGGGGgCGgGGGGaGGCgcgggCCGCGCGcCGCu -3'
miRNA:   3'- -CCCCaGCgUCCC-CCG-----GGCGCGCcGCG- -5'
6482 5' -67.7 NC_001847.1 + 134499 0.67 0.347967
Target:  5'- cGGGU-GUAGuGuGGGCCgUGCggccGCGGCGCa -3'
miRNA:   3'- cCCCAgCGUC-C-CCCGG-GCG----CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 134393 0.73 0.127785
Target:  5'- cGGGccggccUCGCccuaGGGGGGCCCGCgggaagggagggagGgGGCGCg -3'
miRNA:   3'- cCCC------AGCG----UCCCCCGGGCG--------------CgCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 134153 0.66 0.392917
Target:  5'- uGGGGgcagaaggUGCGuGcGGGCCgGCGCauagacgcccGGCGCa -3'
miRNA:   3'- -CCCCa-------GCGUcC-CCCGGgCGCG----------CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 134082 0.68 0.281506
Target:  5'- uGGGaCGCGGaccaGGGCCCGCGgGaGaCGCu -3'
miRNA:   3'- cCCCaGCGUCc---CCCGGGCGCgC-C-GCG- -5'
6482 5' -67.7 NC_001847.1 + 134035 0.69 0.246693
Target:  5'- uGGaGGcCGCGGcGGcgccGCCCGCggccGCGGCGCc -3'
miRNA:   3'- -CC-CCaGCGUC-CCc---CGGGCG----CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 133966 0.69 0.24125
Target:  5'- -cGGcCGCGGcGGuGGCCUucuGCGCGGcCGCg -3'
miRNA:   3'- ccCCaGCGUC-CC-CCGGG---CGCGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 133790 0.66 0.369975
Target:  5'- cGGG-CGCaAGGacauGGCCgcgcaggGCGCGGCGCu -3'
miRNA:   3'- cCCCaGCG-UCCc---CCGGg------CGCGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 133173 0.67 0.340842
Target:  5'- cGGGGaggCGCuGGcGGCgCCGCcCGGCGa -3'
miRNA:   3'- -CCCCa--GCGuCCcCCG-GGCGcGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 133064 0.71 0.183062
Target:  5'- cGGGcccCGCGGGGcGCUCGCcgccaccgcugcgGCGGCGCg -3'
miRNA:   3'- cCCCa--GCGUCCCcCGGGCG-------------CGCCGCG- -5'
6482 5' -67.7 NC_001847.1 + 132794 0.67 0.347967
Target:  5'- ----aCGCGGccGGGCCgGCGCGGCGg -3'
miRNA:   3'- ccccaGCGUCc-CCCGGgCGCGCCGCg -5'
6482 5' -67.7 NC_001847.1 + 132545 0.67 0.340842
Target:  5'- -cGG-CGCGGcGGGCUCGCguGCGGcCGCg -3'
miRNA:   3'- ccCCaGCGUCcCCCGGGCG--CGCC-GCG- -5'
6482 5' -67.7 NC_001847.1 + 132369 0.73 0.138294
Target:  5'- uGGaGGcCGCcggcGGGGGcGCCgGCGCcGGCGCc -3'
miRNA:   3'- -CC-CCaGCG----UCCCC-CGGgCGCG-CCGCG- -5'
6482 5' -67.7 NC_001847.1 + 132271 0.66 0.385167
Target:  5'- -cGG-CGC-GGcGGCCCGCGCgucggccugGGCGCu -3'
miRNA:   3'- ccCCaGCGuCCcCCGGGCGCG---------CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.