miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6483 3' -56.5 NC_001847.1 + 29820 0.66 0.8218
Target:  5'- cGAGGGAAGGAagaaGGGccGAGGaGGAGGAGn -3'
miRNA:   3'- -UUCUCUUCCUc---CCC--UUCCcCUUCCUC- -5'
6483 3' -56.5 NC_001847.1 + 29852 0.83 0.123226
Target:  5'- gAGGAGGAGGAGGaGGAagaAGGGGAcGGGGa -3'
miRNA:   3'- -UUCUCUUCCUCC-CCU---UCCCCUuCCUC- -5'
6483 3' -56.5 NC_001847.1 + 32068 0.75 0.334789
Target:  5'- cGGAGAcggcGGGGgccGGGGAagauuGGGGGGAGGGGg -3'
miRNA:   3'- uUCUCU----UCCU---CCCCU-----UCCCCUUCCUC- -5'
6483 3' -56.5 NC_001847.1 + 32137 0.7 0.614166
Target:  5'- ---cGggGGcGGGGgcGGGGgcGGGGg -3'
miRNA:   3'- uucuCuuCCuCCCCuuCCCCuuCCUC- -5'
6483 3' -56.5 NC_001847.1 + 32774 0.67 0.794956
Target:  5'- gAGGAGAucccugugGGGGGaGGGccGGGGgcGGAc -3'
miRNA:   3'- -UUCUCU--------UCCUC-CCCuuCCCCuuCCUc -5'
6483 3' -56.5 NC_001847.1 + 32929 0.73 0.47321
Target:  5'- cGGGAGGAGGccggcggcGGGGccGGGGGGgcGGAGg -3'
miRNA:   3'- -UUCUCUUCCu-------CCCC--UUCCCCuuCCUC- -5'
6483 3' -56.5 NC_001847.1 + 33816 0.74 0.3831
Target:  5'- cAGAGAagagGGGAGGGGAGcGGGcuuGGGAGu -3'
miRNA:   3'- uUCUCU----UCCUCCCCUUcCCCu--UCCUC- -5'
6483 3' -56.5 NC_001847.1 + 33856 0.68 0.717384
Target:  5'- gGAGAGAccgcGGGcuGGGGGgcGGGcaguGAGGAGg -3'
miRNA:   3'- -UUCUCU----UCC--UCCCCuuCCCc---UUCCUC- -5'
6483 3' -56.5 NC_001847.1 + 40819 0.66 0.830403
Target:  5'- ------cGGGGGGGAGcugcaccacccGGGGGAGGAa -3'
miRNA:   3'- uucucuuCCUCCCCUU-----------CCCCUUCCUc -5'
6483 3' -56.5 NC_001847.1 + 46781 0.84 0.099564
Target:  5'- --aAGAGGGGGGGGggGGGGAGGGc- -3'
miRNA:   3'- uucUCUUCCUCCCCuuCCCCUUCCuc -5'
6483 3' -56.5 NC_001847.1 + 52976 0.79 0.21035
Target:  5'- --aAGggGGGGGGGAAGGGGGAcgcgcaggcauggcGGAGc -3'
miRNA:   3'- uucUCuuCCUCCCCUUCCCCUU--------------CCUC- -5'
6483 3' -56.5 NC_001847.1 + 54443 0.71 0.583086
Target:  5'- cAGAGAc-GAGGGGGGcGGGGAcgagcccgAGGAGg -3'
miRNA:   3'- uUCUCUucCUCCCCUU-CCCCU--------UCCUC- -5'
6483 3' -56.5 NC_001847.1 + 54540 0.66 0.83882
Target:  5'- cGGcGggGGcGGGGgcGGGGAAGa-- -3'
miRNA:   3'- uUCuCuuCCuCCCCuuCCCCUUCcuc -5'
6483 3' -56.5 NC_001847.1 + 68056 0.74 0.3831
Target:  5'- -cGAaGGGGAGGGaGAAGGGGAAgcuGGAGc -3'
miRNA:   3'- uuCUcUUCCUCCC-CUUCCCCUU---CCUC- -5'
6483 3' -56.5 NC_001847.1 + 68207 0.72 0.482808
Target:  5'- gGGGAGAcGuGAaaagGGGGAAGGGG-GGGAGg -3'
miRNA:   3'- -UUCUCUuC-CU----CCCCUUCCCCuUCCUC- -5'
6483 3' -56.5 NC_001847.1 + 76722 0.73 0.463709
Target:  5'- -cGGGAAGGAcGGucGGgcGGGGAAGGAc -3'
miRNA:   3'- uuCUCUUCCU-CC--CCuuCCCCUUCCUc -5'
6483 3' -56.5 NC_001847.1 + 79544 0.68 0.717384
Target:  5'- cGGGGccGGGGGGGcuGGGGcucgcGGGGGg -3'
miRNA:   3'- uUCUCuuCCUCCCCuuCCCCu----UCCUC- -5'
6483 3' -56.5 NC_001847.1 + 84460 0.79 0.211937
Target:  5'- --cGGggGGuGGGGAGcGGGGggGGGGg -3'
miRNA:   3'- uucUCuuCCuCCCCUU-CCCCuuCCUC- -5'
6483 3' -56.5 NC_001847.1 + 88324 0.75 0.366492
Target:  5'- gAAGAGGAGGAcgaggGGGGAgaagaagacgGGGGGAacgAGGGGc -3'
miRNA:   3'- -UUCUCUUCCU-----CCCCU----------UCCCCU---UCCUC- -5'
6483 3' -56.5 NC_001847.1 + 90639 0.69 0.676479
Target:  5'- -uGAG-GGGAuGGGggGGGGaAAGGAa -3'
miRNA:   3'- uuCUCuUCCUcCCCuuCCCC-UUCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.