miRNA display CGI


Results 1 - 20 of 559 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6483 5' -67.8 NC_001847.1 + 79984 0.66 0.391001
Target:  5'- gGCgaGCCGCUgcgcggcggugaCGC-CCCGcGCCCGCgCGg -3'
miRNA:   3'- gUGa-CGGCGG------------GCGaGGGC-CGGGCG-GC- -5'
6483 5' -67.8 NC_001847.1 + 93331 0.66 0.375545
Target:  5'- cCGC-GCCGCCCGCccgCgCGGUgCGUCu -3'
miRNA:   3'- -GUGaCGGCGGGCGa--GgGCCGgGCGGc -5'
6483 5' -67.8 NC_001847.1 + 108264 0.66 0.375545
Target:  5'- cCGCUGCCGCgCGUUCCCgcaucaGGCacucgggUGCCu -3'
miRNA:   3'- -GUGACGGCGgGCGAGGG------CCGg------GCGGc -5'
6483 5' -67.8 NC_001847.1 + 27257 1.06 0.000377
Target:  5'- gCACUGCCGCCCGCUCCCGGCCCGCCGu -3'
miRNA:   3'- -GUGACGGCGGGCGAGGGCCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 30661 0.66 0.391001
Target:  5'- aACUgGCCGCgCGacggCCCGGCC-GUCGg -3'
miRNA:   3'- gUGA-CGGCGgGCga--GGGCCGGgCGGC- -5'
6483 5' -67.8 NC_001847.1 + 4035 0.66 0.390219
Target:  5'- uCGCgggGCCGCUuugguucUGgUCCCGGCCCcagucCCGg -3'
miRNA:   3'- -GUGa--CGGCGG-------GCgAGGGCCGGGc----GGC- -5'
6483 5' -67.8 NC_001847.1 + 31441 0.66 0.383221
Target:  5'- gGCgGCCGCggCgGC-CCCGGCgcgggCCGCCGc -3'
miRNA:   3'- gUGaCGGCG--GgCGaGGGCCG-----GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 119348 0.66 0.383221
Target:  5'- aCACcGCCGCcucCCGCcgCgCGGCgcuugCCGCCGg -3'
miRNA:   3'- -GUGaCGGCG---GGCGa-GgGCCG-----GGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 29021 0.66 0.383221
Target:  5'- gGCaGCggCGCCCGCg-CCGcGCUCGCCGn -3'
miRNA:   3'- gUGaCG--GCGGGCGagGGC-CGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 31345 0.66 0.378603
Target:  5'- uGCcGCCGCCgGCggcggaagccccgCCGGCCCggguGCCGg -3'
miRNA:   3'- gUGaCGGCGGgCGag-----------GGCCGGG----CGGC- -5'
6483 5' -67.8 NC_001847.1 + 3702 0.66 0.383221
Target:  5'- aCACgGCCGCggGC-CCCGcGgCCGCCGc -3'
miRNA:   3'- -GUGaCGGCGggCGaGGGC-CgGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 57019 0.66 0.383221
Target:  5'- gGC-GCgCGCCCGCUUuuGgcGCCCGCg- -3'
miRNA:   3'- gUGaCG-GCGGGCGAGggC--CGGGCGgc -5'
6483 5' -67.8 NC_001847.1 + 2695 0.66 0.391001
Target:  5'- ---gGuCCGCCCGCggcgcCCCGGCCC-UCa -3'
miRNA:   3'- gugaC-GGCGGGCGa----GGGCCGGGcGGc -5'
6483 5' -67.8 NC_001847.1 + 11436 0.66 0.383221
Target:  5'- uGCUGCCGCCCcauGCguaucaaaaaCUcGCCUGCCGu -3'
miRNA:   3'- gUGACGGCGGG---CGag--------GGcCGGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 60467 0.66 0.391001
Target:  5'- gGCcGCCGuCCUGC-CgCGGCUCgGCCGg -3'
miRNA:   3'- gUGaCGGC-GGGCGaGgGCCGGG-CGGC- -5'
6483 5' -67.8 NC_001847.1 + 102085 0.66 0.383221
Target:  5'- gUACUGCCGCagCGC-CUCGGCCgcgaGCgCGu -3'
miRNA:   3'- -GUGACGGCGg-GCGaGGGCCGGg---CG-GC- -5'
6483 5' -67.8 NC_001847.1 + 80699 0.66 0.378603
Target:  5'- gGCUcGUC-CCCGCcccccucgucucugCCCGGgCCGCCGa -3'
miRNA:   3'- gUGA-CGGcGGGCGa-------------GGGCCgGGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 19561 0.66 0.375545
Target:  5'- aCGCgaucgaCGCCCGCgaucgCCgCGGCCCGUa- -3'
miRNA:   3'- -GUGacg---GCGGGCGa----GG-GCCGGGCGgc -5'
6483 5' -67.8 NC_001847.1 + 131653 0.66 0.391001
Target:  5'- uCGC-GCgGCUCaugugcgaGCUCUCGGCgCGCCGg -3'
miRNA:   3'- -GUGaCGgCGGG--------CGAGGGCCGgGCGGC- -5'
6483 5' -67.8 NC_001847.1 + 57894 0.66 0.388656
Target:  5'- uCGCccGCCagcGCCCGCgcgaccgcgccaagUCCgGGCCCGgCGg -3'
miRNA:   3'- -GUGa-CGG---CGGGCG--------------AGGgCCGGGCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.