miRNA display CGI


Results 21 - 40 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 3' -66.3 NC_001847.1 + 3885 0.67 0.378683
Target:  5'- gCCCGUCGcGCggCGCCGCGGCGuAGccAGc -3'
miRNA:   3'- gGGGCGGC-CG--GCGGCGCCGC-UCucUC- -5'
6484 3' -66.3 NC_001847.1 + 3933 0.85 0.021058
Target:  5'- gCCCgCGCUGG-CGCCGCGGCGGGGGGGg -3'
miRNA:   3'- -GGG-GCGGCCgGCGGCGCCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 4403 0.66 0.460211
Target:  5'- uCgCCGCCGucgacGCCGaCgGCGGCGAGcgcgcgccgcAGGGa -3'
miRNA:   3'- -GgGGCGGC-----CGGC-GgCGCCGCUC----------UCUC- -5'
6484 3' -66.3 NC_001847.1 + 4535 0.68 0.371079
Target:  5'- gCCUCGCggCGGCCGCCcgcggguggcGCGGCGuG-GAa -3'
miRNA:   3'- -GGGGCG--GCCGGCGG----------CGCCGCuCuCUc -5'
6484 3' -66.3 NC_001847.1 + 4703 0.68 0.348897
Target:  5'- cCCCCGUCgGGCCGagguCCGCGGacuCGAuGAGGu -3'
miRNA:   3'- -GGGGCGG-CCGGC----GGCGCC---GCU-CUCUc -5'
6484 3' -66.3 NC_001847.1 + 4841 0.7 0.246886
Target:  5'- gUCgGCCGGCCGUcaaaaCGCaGGgGAGGGGGg -3'
miRNA:   3'- gGGgCGGCCGGCG-----GCG-CCgCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 4998 0.69 0.320819
Target:  5'- -gCCGCggcaaagcgCGGCgGCgGCGGCGcGGAGGGg -3'
miRNA:   3'- ggGGCG---------GCCGgCGgCGCCGC-UCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 5156 0.66 0.481134
Target:  5'- cCCaCCGCgCGuGCCuuuuuuuuguuuuaCCGCGGCGcGGGAGa -3'
miRNA:   3'- -GG-GGCG-GC-CGGc-------------GGCGCCGCuCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 5202 0.77 0.091139
Target:  5'- cCCUCGCCGGCucucuCGCCGCGGCGGccGGcGGGg -3'
miRNA:   3'- -GGGGCGGCCG-----GCGGCGCCGCU--CU-CUC- -5'
6484 3' -66.3 NC_001847.1 + 5239 0.66 0.434753
Target:  5'- gCUCCGUgcaGGUCuCCGCGG-GGGAGGGg -3'
miRNA:   3'- -GGGGCGg--CCGGcGGCGCCgCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 6127 0.68 0.363579
Target:  5'- uCCCCGCUucCCGCCcaggaccccgGCGGUGAGcGAGc -3'
miRNA:   3'- -GGGGCGGccGGCGG----------CGCCGCUCuCUC- -5'
6484 3' -66.3 NC_001847.1 + 6357 0.67 0.386392
Target:  5'- aCCgCGCCGcgggcguaGCCGCUGCGGC-AGcAGAa -3'
miRNA:   3'- -GGgGCGGC--------CGGCGGCGCCGcUC-UCUc -5'
6484 3' -66.3 NC_001847.1 + 7385 0.69 0.312065
Target:  5'- aCCUGCCGggcaaGCCGCCGCaGCugcuguaccuuuauGGGGGGGg -3'
miRNA:   3'- gGGGCGGC-----CGGCGGCGcCG--------------CUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 7796 0.69 0.281937
Target:  5'- gCCCCGCCGcccCUGCCGCGGCa------ -3'
miRNA:   3'- -GGGGCGGCc--GGCGGCGCCGcucucuc -5'
6484 3' -66.3 NC_001847.1 + 8066 0.71 0.229712
Target:  5'- gCCCGCgCGcagaggggggcaCCGCCGCGGCGAGAu-- -3'
miRNA:   3'- gGGGCG-GCc-----------GGCGGCGCCGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 8597 0.69 0.306769
Target:  5'- gCCCCGCCaggggcggcgcucGGCCGgggGCGGgGGGAGGa -3'
miRNA:   3'- -GGGGCGG-------------CCGGCgg-CGCCgCUCUCUc -5'
6484 3' -66.3 NC_001847.1 + 8624 0.7 0.258151
Target:  5'- gCCCCGCCgggggagcGGCCGCUGCGGacuCGGGcgcccAGAc -3'
miRNA:   3'- -GGGGCGG--------CCGGCGGCGCC---GCUC-----UCUc -5'
6484 3' -66.3 NC_001847.1 + 9575 0.68 0.371079
Target:  5'- gCCCGCCGcCCGCgGCcGCGAucGAGc -3'
miRNA:   3'- gGGGCGGCcGGCGgCGcCGCUcuCUC- -5'
6484 3' -66.3 NC_001847.1 + 10067 0.69 0.281937
Target:  5'- gCCgCGCgGGCCcagcgccccGCCGCGcGCGGGAGc- -3'
miRNA:   3'- -GGgGCGgCCGG---------CGGCGC-CGCUCUCuc -5'
6484 3' -66.3 NC_001847.1 + 10123 0.68 0.363579
Target:  5'- cCUUCGCggcgagcgggccCGGCCGUagCGCGaGCGGGAGGGc -3'
miRNA:   3'- -GGGGCG------------GCCGGCG--GCGC-CGCUCUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.