miRNA display CGI


Results 21 - 40 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 3' -66.3 NC_001847.1 + 5239 0.66 0.434753
Target:  5'- gCUCCGUgcaGGUCuCCGCGG-GGGAGGGg -3'
miRNA:   3'- -GGGGCGg--CCGGcGGCGCCgCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 84333 0.66 0.434753
Target:  5'- cCCCCGuaaaaccguaCCGGCCGCaGCGccGCGAGGu-- -3'
miRNA:   3'- -GGGGC----------GGCCGGCGgCGC--CGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 83175 0.66 0.451636
Target:  5'- gCCCGaCgGGCUGgCGgaCGGCGGGGGGc -3'
miRNA:   3'- gGGGC-GgCCGGCgGC--GCCGCUCUCUc -5'
6484 3' -66.3 NC_001847.1 + 76637 0.66 0.42645
Target:  5'- uCCCUGCCcGUCGCCcugcccgaggGCGGgGAGGGc- -3'
miRNA:   3'- -GGGGCGGcCGGCGG----------CGCCgCUCUCuc -5'
6484 3' -66.3 NC_001847.1 + 36372 0.66 0.425624
Target:  5'- gCgCCGCCGcggcccgggcagcGCgCGCCGCGGCGAcGGuGc -3'
miRNA:   3'- -GgGGCGGC-------------CG-GCGGCGCCGCUcUCuC- -5'
6484 3' -66.3 NC_001847.1 + 131958 0.66 0.443149
Target:  5'- -aCCGCUGcGCCGUCGCcugccgcgaGGCGcuGGAGg -3'
miRNA:   3'- ggGGCGGC-CGGCGGCG---------CCGCucUCUC- -5'
6484 3' -66.3 NC_001847.1 + 117901 0.66 0.451636
Target:  5'- uCCCCGCCcuuguugaGGuuGaCGCGGUGuGGGGc -3'
miRNA:   3'- -GGGGCGG--------CCggCgGCGCCGCuCUCUc -5'
6484 3' -66.3 NC_001847.1 + 35244 0.66 0.443149
Target:  5'- -gCgGCCGGCgGgCgCGCGGCG-GAGAu -3'
miRNA:   3'- ggGgCGGCCGgC-G-GCGCCGCuCUCUc -5'
6484 3' -66.3 NC_001847.1 + 132863 0.66 0.456771
Target:  5'- gCCCCGCCGccgacggcggcuuCCGCCGCGuGCcgcccGGGGAc -3'
miRNA:   3'- -GGGGCGGCc------------GGCGGCGC-CGc----UCUCUc -5'
6484 3' -66.3 NC_001847.1 + 132389 0.66 0.42645
Target:  5'- gCCggCGCCGgcGCCGCCGCGcCGGGccGGGGg -3'
miRNA:   3'- gGG--GCGGC--CGGCGGCGCcGCUC--UCUC- -5'
6484 3' -66.3 NC_001847.1 + 19933 0.66 0.457629
Target:  5'- aCCUGCCGcaccuuuugcagcaGCCGCCGaauccCGAGGGGGa -3'
miRNA:   3'- gGGGCGGC--------------CGGCGGCgcc--GCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 132012 0.66 0.433918
Target:  5'- gCgCCGCCgGGCUcccggugcucucgGCCGCGGCGGGc--- -3'
miRNA:   3'- -GgGGCGG-CCGG-------------CGGCGCCGCUCucuc -5'
6484 3' -66.3 NC_001847.1 + 116428 0.66 0.451636
Target:  5'- gCCCGCUGGCgCuccCCGCGGCGcuGGcGg -3'
miRNA:   3'- gGGGCGGCCG-Gc--GGCGCCGCucUCuC- -5'
6484 3' -66.3 NC_001847.1 + 11090 0.66 0.42645
Target:  5'- aCCCCGUgcuguucaaccaCGG-CGUCGUGGCGcuGGAGg -3'
miRNA:   3'- -GGGGCG------------GCCgGCGGCGCCGCucUCUC- -5'
6484 3' -66.3 NC_001847.1 + 131345 0.66 0.43142
Target:  5'- gCCgCCGcCCGGCCGCgugcgcuucggcggCGCGGgCGAcacccgcGAGGGc -3'
miRNA:   3'- -GG-GGC-GGCCGGCG--------------GCGCC-GCU-------CUCUC- -5'
6484 3' -66.3 NC_001847.1 + 80691 0.66 0.443149
Target:  5'- gCgCCGgCGGCgGCUGCGGCuGGaAGAa -3'
miRNA:   3'- -GgGGCgGCCGgCGGCGCCGcUC-UCUc -5'
6484 3' -66.3 NC_001847.1 + 134049 0.66 0.434753
Target:  5'- gCgCCGCCcGCgGCCGCGGCGcccggcguGGAcuGGGa -3'
miRNA:   3'- -GgGGCGGcCGgCGGCGCCGC--------UCU--CUC- -5'
6484 3' -66.3 NC_001847.1 + 24237 0.66 0.451636
Target:  5'- cUCCaCGuUCaGCCGCCgcGCGGCGGGcGAGa -3'
miRNA:   3'- -GGG-GC-GGcCGGCGG--CGCCGCUCuCUC- -5'
6484 3' -66.3 NC_001847.1 + 13140 0.66 0.460211
Target:  5'- gCgCCGCCuGCCGCgGCcGGCGGuuGGGc -3'
miRNA:   3'- -GgGGCGGcCGGCGgCG-CCGCUcuCUC- -5'
6484 3' -66.3 NC_001847.1 + 25340 0.66 0.459349
Target:  5'- cUCCCGCaucguccacguggCGGCgGUCGCGGCGAu---- -3'
miRNA:   3'- -GGGGCG-------------GCCGgCGGCGCCGCUcucuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.