miRNA display CGI


Results 41 - 60 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 3' -66.3 NC_001847.1 + 31865 0.66 0.42645
Target:  5'- gCUCGCCGGCguUGCUGCcGGCG-GAGc- -3'
miRNA:   3'- gGGGCGGCCG--GCGGCG-CCGCuCUCuc -5'
6484 3' -66.3 NC_001847.1 + 132389 0.66 0.42645
Target:  5'- gCCggCGCCGgcGCCGCCGCGcCGGGccGGGGg -3'
miRNA:   3'- gGG--GCGGC--CGGCGGCGCcGCUC--UCUC- -5'
6484 3' -66.3 NC_001847.1 + 35696 0.66 0.468872
Target:  5'- -gCUGCUGGCgGCCGUGGa-GGAGGc -3'
miRNA:   3'- ggGGCGGCCGgCGGCGCCgcUCUCUc -5'
6484 3' -66.3 NC_001847.1 + 132012 0.66 0.433918
Target:  5'- gCgCCGCCgGGCUcccggugcucucgGCCGCGGCGGGc--- -3'
miRNA:   3'- -GgGGCGG-CCGG-------------CGGCGCCGCUCucuc -5'
6484 3' -66.3 NC_001847.1 + 88557 0.66 0.468872
Target:  5'- gCgUGaCCGcGCuCGCgCGCGGCGcGAGAGa -3'
miRNA:   3'- gGgGC-GGC-CG-GCG-GCGCCGCuCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 64349 0.66 0.434753
Target:  5'- cCCCUcCCGGCCccGCCGCGaaGCGAGccgccAGAc -3'
miRNA:   3'- -GGGGcGGCCGG--CGGCGC--CGCUC-----UCUc -5'
6484 3' -66.3 NC_001847.1 + 30252 0.66 0.443149
Target:  5'- -gUCGCUGGCggcguugcagcgCGCCGCGGCGcAGAcGAc -3'
miRNA:   3'- ggGGCGGCCG------------GCGGCGCCGC-UCU-CUc -5'
6484 3' -66.3 NC_001847.1 + 65855 0.66 0.477615
Target:  5'- gUCCGCCcGCaCGCCGCGuaGAG-GAa -3'
miRNA:   3'- gGGGCGGcCG-GCGGCGCcgCUCuCUc -5'
6484 3' -66.3 NC_001847.1 + 122138 0.66 0.460211
Target:  5'- -aCgGCCGGCgcgcagggCGCCGCG-CGGGAcGAGg -3'
miRNA:   3'- ggGgCGGCCG--------GCGGCGCcGCUCU-CUC- -5'
6484 3' -66.3 NC_001847.1 + 5239 0.66 0.434753
Target:  5'- gCUCCGUgcaGGUCuCCGCGG-GGGAGGGg -3'
miRNA:   3'- -GGGGCGg--CCGGcGGCGCCgCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 48197 0.66 0.477615
Target:  5'- gCCgCGCCGGCgGCCaG-GGcCGAG-GAGc -3'
miRNA:   3'- -GGgGCGGCCGgCGG-CgCC-GCUCuCUC- -5'
6484 3' -66.3 NC_001847.1 + 5156 0.66 0.481134
Target:  5'- cCCaCCGCgCGuGCCuuuuuuuuguuuuaCCGCGGCGcGGGAGa -3'
miRNA:   3'- -GG-GGCG-GC-CGGc-------------GGCGCCGCuCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 134049 0.66 0.434753
Target:  5'- gCgCCGCCcGCgGCCGCGGCGcccggcguGGAcuGGGa -3'
miRNA:   3'- -GgGGCGGcCGgCGGCGCCGC--------UCU--CUC- -5'
6484 3' -66.3 NC_001847.1 + 11316 0.66 0.433918
Target:  5'- gCCCGCCgaGGCCGgCG-GGCGGcuggcgccggagcGGGAGc -3'
miRNA:   3'- gGGGCGG--CCGGCgGCgCCGCU-------------CUCUC- -5'
6484 3' -66.3 NC_001847.1 + 24237 0.66 0.451636
Target:  5'- cUCCaCGuUCaGCCGCCgcGCGGCGGGcGAGa -3'
miRNA:   3'- -GGG-GC-GGcCGGCGG--CGCCGCUCuCUC- -5'
6484 3' -66.3 NC_001847.1 + 132863 0.66 0.456771
Target:  5'- gCCCCGCCGccgacggcggcuuCCGCCGCGuGCcgcccGGGGAc -3'
miRNA:   3'- -GGGGCGGCc------------GGCGGCGC-CGc----UCUCUc -5'
6484 3' -66.3 NC_001847.1 + 83175 0.66 0.451636
Target:  5'- gCCCGaCgGGCUGgCGgaCGGCGGGGGGc -3'
miRNA:   3'- gGGGC-GgCCGGCgGC--GCCGCUCUCUc -5'
6484 3' -66.3 NC_001847.1 + 38467 0.66 0.443149
Target:  5'- aCCCGCCGGCCcCCGCGcaCGAc---- -3'
miRNA:   3'- gGGGCGGCCGGcGGCGCc-GCUcucuc -5'
6484 3' -66.3 NC_001847.1 + 132365 0.66 0.434753
Target:  5'- gCCCUGgaGGCCGCC--GGCGGGGGc- -3'
miRNA:   3'- -GGGGCggCCGGCGGcgCCGCUCUCuc -5'
6484 3' -66.3 NC_001847.1 + 80691 0.66 0.443149
Target:  5'- gCgCCGgCGGCgGCUGCGGCuGGaAGAa -3'
miRNA:   3'- -GgGGCgGCCGgCGGCGCCGcUC-UCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.