miRNA display CGI


Results 41 - 60 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 3' -66.3 NC_001847.1 + 15779 0.74 0.151774
Target:  5'- uUUCGCCGGCgGCaagcgccgCGCGGCGGGAGGc -3'
miRNA:   3'- gGGGCGGCCGgCG--------GCGCCGCUCUCUc -5'
6484 3' -66.3 NC_001847.1 + 77494 0.74 0.151774
Target:  5'- gCCCGCCGGCCcgaGUCgGUGGCcGGGGAGc -3'
miRNA:   3'- gGGGCGGCCGG---CGG-CGCCGcUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 101055 0.73 0.154324
Target:  5'- aCCCGCCgaggccggccccggGGCCGCCGCGGgGGccGGGu -3'
miRNA:   3'- gGGGCGG--------------CCGGCGGCGCCgCUcuCUC- -5'
6484 3' -66.3 NC_001847.1 + 80620 0.73 0.155059
Target:  5'- cCCCCGCCgcGGuuGCCGaUGGCGAcggcggcgcucgcGGGAGa -3'
miRNA:   3'- -GGGGCGG--CCggCGGC-GCCGCU-------------CUCUC- -5'
6484 3' -66.3 NC_001847.1 + 42938 0.73 0.155428
Target:  5'- -gCCGCCcaagcGGCCgacGCCGCGcGCGGGGGGGg -3'
miRNA:   3'- ggGGCGG-----CCGG---CGGCGC-CGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 103189 0.73 0.155428
Target:  5'- gCCCGCC-GCCGCCGCGGC-AGGc-- -3'
miRNA:   3'- gGGGCGGcCGGCGGCGCCGcUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 104327 0.73 0.155428
Target:  5'- gCCCCGCC-GCCguguuuGCCGCGGCGGcAGAc -3'
miRNA:   3'- -GGGGCGGcCGG------CGGCGCCGCUcUCUc -5'
6484 3' -66.3 NC_001847.1 + 34063 0.73 0.155428
Target:  5'- gCCCCGCCgacccGGCCcCCGCGGCGGccccGGGGc -3'
miRNA:   3'- -GGGGCGG-----CCGGcGGCGCCGCU----CUCUc -5'
6484 3' -66.3 NC_001847.1 + 54685 0.73 0.159163
Target:  5'- gCCCGaCGGCgGCgGCGGCGcccgcGGGGAGg -3'
miRNA:   3'- gGGGCgGCCGgCGgCGCCGC-----UCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 15925 0.73 0.162593
Target:  5'- gCCCCGCCgccccgcGGUgGCCGCGGCGccGAcGAGc -3'
miRNA:   3'- -GGGGCGG-------CCGgCGGCGCCGCu-CU-CUC- -5'
6484 3' -66.3 NC_001847.1 + 27507 0.73 0.162978
Target:  5'- gCCUCgGCC-GCCGCCGCGGCGgcggcGGGGAc -3'
miRNA:   3'- -GGGG-CGGcCGGCGGCGCCGC-----UCUCUc -5'
6484 3' -66.3 NC_001847.1 + 38651 0.73 0.166875
Target:  5'- gCCCGCCGcGuuGCCGUGGCGAc---- -3'
miRNA:   3'- gGGGCGGC-CggCGGCGCCGCUcucuc -5'
6484 3' -66.3 NC_001847.1 + 46598 0.73 0.166875
Target:  5'- gCCCCGCCGGCgCGgccUCGCGGCGcacGAGc -3'
miRNA:   3'- -GGGGCGGCCG-GC---GGCGCCGCucuCUC- -5'
6484 3' -66.3 NC_001847.1 + 130610 0.73 0.166875
Target:  5'- aCCCGCgGGCgGCCGCcGCGAGGc-- -3'
miRNA:   3'- gGGGCGgCCGgCGGCGcCGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 89853 0.73 0.170454
Target:  5'- -aCCGCCGGCugcaaggccggcuCGCCGCGGCGGGc--- -3'
miRNA:   3'- ggGGCGGCCG-------------GCGGCGCCGCUCucuc -5'
6484 3' -66.3 NC_001847.1 + 113524 0.73 0.170856
Target:  5'- gCCCgCGCCGGCCaagcGCCGCcaGCGAGuuuAGGGg -3'
miRNA:   3'- -GGG-GCGGCCGG----CGGCGc-CGCUC---UCUC- -5'
6484 3' -66.3 NC_001847.1 + 74399 0.73 0.170856
Target:  5'- -aCCGCgCGGCCGCCGCGcGCGcGcGGGc -3'
miRNA:   3'- ggGGCG-GCCGGCGGCGC-CGCuCuCUC- -5'
6484 3' -66.3 NC_001847.1 + 10711 0.73 0.170856
Target:  5'- gCCCgCGCCGGCCaagcGCCGCcaGCGAGuuuAGGGg -3'
miRNA:   3'- -GGG-GCGGCCGG----CGGCGc-CGCUC---UCUC- -5'
6484 3' -66.3 NC_001847.1 + 125090 0.73 0.174921
Target:  5'- gCCCGCgCGGCCaagaugucguucGCgGCGGCGAGAa-- -3'
miRNA:   3'- gGGGCG-GCCGG------------CGgCGCCGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 109331 0.73 0.174921
Target:  5'- gCCUGcCCGGCCGaCGCGGCG-GAGcAGc -3'
miRNA:   3'- gGGGC-GGCCGGCgGCGCCGCuCUC-UC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.