miRNA display CGI


Results 41 - 60 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 3' -66.3 NC_001847.1 + 80070 0.66 0.460211
Target:  5'- cCCCCG-CGGCCGCCagcauaaacGCGGCcAGcuccuccuuGAGg -3'
miRNA:   3'- -GGGGCgGCCGGCGG---------CGCCGcUCu--------CUC- -5'
6484 3' -66.3 NC_001847.1 + 64868 0.66 0.460211
Target:  5'- aCCCGCCaGGCgCGCguccuCGCGguacaGCGAGAGcGg -3'
miRNA:   3'- gGGGCGG-CCG-GCG-----GCGC-----CGCUCUCuC- -5'
6484 3' -66.3 NC_001847.1 + 39398 0.66 0.460211
Target:  5'- gCCggCGCCGGCCggGCUccuccgaaaGCaGCGAGGGGGg -3'
miRNA:   3'- gGG--GCGGCCGG--CGG---------CGcCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 13140 0.66 0.460211
Target:  5'- gCgCCGCCuGCCGCgGCcGGCGGuuGGGc -3'
miRNA:   3'- -GgGGCGGcCGGCGgCG-CCGCUcuCUC- -5'
6484 3' -66.3 NC_001847.1 + 34805 0.66 0.459349
Target:  5'- aCCCG-CGGCCGCuggCGCGGCaGGccgaccgggcgcuGGAGg -3'
miRNA:   3'- gGGGCgGCCGGCG---GCGCCGcUC-------------UCUC- -5'
6484 3' -66.3 NC_001847.1 + 25340 0.66 0.459349
Target:  5'- cUCCCGCaucguccacguggCGGCgGUCGCGGCGAu---- -3'
miRNA:   3'- -GGGGCG-------------GCCGgCGGCGCCGCUcucuc -5'
6484 3' -66.3 NC_001847.1 + 19933 0.66 0.457629
Target:  5'- aCCUGCCGcaccuuuugcagcaGCCGCCGaauccCGAGGGGGa -3'
miRNA:   3'- gGGGCGGC--------------CGGCGGCgcc--GCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 30050 0.66 0.456771
Target:  5'- gCCCCGCCGccgacggcggcuuCCGCCGCGuGCcgcccGGGGAc -3'
miRNA:   3'- -GGGGCGGCc------------GGCGGCGC-CGc----UCUCUc -5'
6484 3' -66.3 NC_001847.1 + 132863 0.66 0.456771
Target:  5'- gCCCCGCCGccgacggcggcuuCCGCCGCGuGCcgcccGGGGAc -3'
miRNA:   3'- -GGGGCGGCc------------GGCGGCGC-CGc----UCUCUc -5'
6484 3' -66.3 NC_001847.1 + 58042 0.66 0.456771
Target:  5'- gCCCCGCCgcuaccgcgcgcgGGCCGCCGauuGGCGcgcgcgcgcgccgcAGcGGGu -3'
miRNA:   3'- -GGGGCGG-------------CCGGCGGCg--CCGC--------------UCuCUC- -5'
6484 3' -66.3 NC_001847.1 + 24237 0.66 0.451636
Target:  5'- cUCCaCGuUCaGCCGCCgcGCGGCGGGcGAGa -3'
miRNA:   3'- -GGG-GC-GGcCGGCGG--CGCCGCUCuCUC- -5'
6484 3' -66.3 NC_001847.1 + 46338 0.66 0.451636
Target:  5'- gCCCGCgGgGCCGCgucgGCGGCaucGGGGGGc -3'
miRNA:   3'- gGGGCGgC-CGGCGg---CGCCGc--UCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 83175 0.66 0.451636
Target:  5'- gCCCGaCgGGCUGgCGgaCGGCGGGGGGc -3'
miRNA:   3'- gGGGC-GgCCGGCgGC--GCCGCUCUCUc -5'
6484 3' -66.3 NC_001847.1 + 115963 0.66 0.451636
Target:  5'- aCCCCGCCc-CCGCCGUGcuGCGcGGGGu -3'
miRNA:   3'- -GGGGCGGccGGCGGCGC--CGCuCUCUc -5'
6484 3' -66.3 NC_001847.1 + 132527 0.66 0.451636
Target:  5'- gUCCCGCCGaagcaccuCCGgCGCGGCGGGc--- -3'
miRNA:   3'- -GGGGCGGCc-------GGCgGCGCCGCUCucuc -5'
6484 3' -66.3 NC_001847.1 + 116428 0.66 0.451636
Target:  5'- gCCCGCUGGCgCuccCCGCGGCGcuGGcGg -3'
miRNA:   3'- gGGGCGGCCG-Gc--GGCGCCGCucUCuC- -5'
6484 3' -66.3 NC_001847.1 + 117901 0.66 0.451636
Target:  5'- uCCCCGCCcuuguugaGGuuGaCGCGGUGuGGGGc -3'
miRNA:   3'- -GGGGCGG--------CCggCgGCGCCGCuCUCUc -5'
6484 3' -66.3 NC_001847.1 + 50060 0.66 0.451636
Target:  5'- -gCCGCgGGuCCGCgCGCGGCGcGGAcccGGGc -3'
miRNA:   3'- ggGGCGgCC-GGCG-GCGCCGC-UCU---CUC- -5'
6484 3' -66.3 NC_001847.1 + 34396 0.66 0.451636
Target:  5'- -gCCGCC-GCCGCggcagaCGCGGCGcuGGGGg -3'
miRNA:   3'- ggGGCGGcCGGCG------GCGCCGCucUCUC- -5'
6484 3' -66.3 NC_001847.1 + 80691 0.66 0.443149
Target:  5'- gCgCCGgCGGCgGCUGCGGCuGGaAGAa -3'
miRNA:   3'- -GgGGCgGCCGgCGGCGCCGcUC-UCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.