Results 41 - 60 of 487 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6484 | 3' | -66.3 | NC_001847.1 | + | 120076 | 0.81 | 0.047572 |
Target: 5'- cUCCUGCCGaGCCGCgCGgGGCGGGAGAu -3' miRNA: 3'- -GGGGCGGC-CGGCG-GCgCCGCUCUCUc -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 64452 | 0.81 | 0.045227 |
Target: 5'- cCCCCGCC-GCCGcCCGCGGCGGcgcGGGGGg -3' miRNA: 3'- -GGGGCGGcCGGC-GGCGCCGCU---CUCUC- -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 12617 | 0.82 | 0.0373 |
Target: 5'- cCCCCGCuccucaacauggaggCGGCCGCUGCGGCugcggGGGAGAGg -3' miRNA: 3'- -GGGGCG---------------GCCGGCGGCGCCG-----CUCUCUC- -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 106746 | 0.85 | 0.021058 |
Target: 5'- gCCCgCGCUGG-CGCCGCGGCGGGGGGGg -3' miRNA: 3'- -GGG-GCGGCCgGCGGCGCCGCUCUCUC- -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 132716 | 0.91 | 0.008131 |
Target: 5'- gCCCUGCCGGCCGCCGCGGgggccccuCGGGGGAGg -3' miRNA: 3'- -GGGGCGGCCGGCGGCGCC--------GCUCUCUC- -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 84224 | 0.76 | 0.110912 |
Target: 5'- gCCCUGaCGGCCgggGCCGCcGCGGGGGAGg -3' miRNA: 3'- -GGGGCgGCCGG---CGGCGcCGCUCUCUC- -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 100652 | 0.75 | 0.113649 |
Target: 5'- gCCaggGCCGcGCUGCUGCGGCGGGGGGu -3' miRNA: 3'- gGGg--CGGC-CGGCGGCGCCGCUCUCUc -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 46598 | 0.73 | 0.166875 |
Target: 5'- gCCCCGCCGGCgCGgccUCGCGGCGcacGAGc -3' miRNA: 3'- -GGGGCGGCCG-GC---GGCGCCGCucuCUC- -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 38651 | 0.73 | 0.166875 |
Target: 5'- gCCCGCCGcGuuGCCGUGGCGAc---- -3' miRNA: 3'- gGGGCGGC-CggCGGCGCCGCUcucuc -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 27507 | 0.73 | 0.162978 |
Target: 5'- gCCUCgGCC-GCCGCCGCGGCGgcggcGGGGAc -3' miRNA: 3'- -GGGG-CGGcCGGCGGCGCCGC-----UCUCUc -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 15925 | 0.73 | 0.162593 |
Target: 5'- gCCCCGCCgccccgcGGUgGCCGCGGCGccGAcGAGc -3' miRNA: 3'- -GGGGCGG-------CCGgCGGCGCCGCu-CU-CUC- -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 80620 | 0.73 | 0.155059 |
Target: 5'- cCCCCGCCgcGGuuGCCGaUGGCGAcggcggcgcucgcGGGAGa -3' miRNA: 3'- -GGGGCGG--CCggCGGC-GCCGCU-------------CUCUC- -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 101055 | 0.73 | 0.154324 |
Target: 5'- aCCCGCCgaggccggccccggGGCCGCCGCGGgGGccGGGu -3' miRNA: 3'- gGGGCGG--------------CCGGCGGCGCCgCUcuCUC- -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 77494 | 0.74 | 0.151774 |
Target: 5'- gCCCGCCGGCCcgaGUCgGUGGCcGGGGAGc -3' miRNA: 3'- gGGGCGGCCGG---CGG-CGCCGcUCUCUC- -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 15779 | 0.74 | 0.151774 |
Target: 5'- uUUCGCCGGCgGCaagcgccgCGCGGCGGGAGGc -3' miRNA: 3'- gGGGCGGCCGgCG--------GCGCCGCUCUCUc -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 57105 | 0.74 | 0.148197 |
Target: 5'- -aCCGCCGcGCCGCCGCGcGCauguuGGGGGAc -3' miRNA: 3'- ggGGCGGC-CGGCGGCGC-CG-----CUCUCUc -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 85555 | 0.74 | 0.141273 |
Target: 5'- cUCCCGCUGcgcccaggcGCCGCCGuCGGCcGAGAGGu -3' miRNA: 3'- -GGGGCGGC---------CGGCGGC-GCCG-CUCUCUc -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 34459 | 0.74 | 0.141273 |
Target: 5'- gCCgCGgUGGCCGCCgGCGGCGAG-GAu -3' miRNA: 3'- -GGgGCgGCCGGCGG-CGCCGCUCuCUc -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 82455 | 0.75 | 0.119315 |
Target: 5'- aCCCCGCgcaCGGCCGCgUGCGGCGugccguGGGAc -3' miRNA: 3'- -GGGGCG---GCCGGCG-GCGCCGCu-----CUCUc -5' |
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6484 | 3' | -66.3 | NC_001847.1 | + | 90546 | 0.75 | 0.11645 |
Target: 5'- gCCCUGgCGGCCcucGCCGCGcGCGAGGGcGa -3' miRNA: 3'- -GGGGCgGCCGG---CGGCGC-CGCUCUCuC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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