miRNA display CGI


Results 61 - 80 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6484 3' -66.3 NC_001847.1 + 131944 0.66 0.443149
Target:  5'- gUgCGCCGGCgauggcggCGaCgGCGGCGAGAGcGGg -3'
miRNA:   3'- gGgGCGGCCG--------GC-GgCGCCGCUCUC-UC- -5'
6484 3' -66.3 NC_001847.1 + 109940 0.66 0.443149
Target:  5'- uCUuuGCCGGCCGCgCGCGGgGc----- -3'
miRNA:   3'- -GGggCGGCCGGCG-GCGCCgCucucuc -5'
6484 3' -66.3 NC_001847.1 + 35244 0.66 0.443149
Target:  5'- -gCgGCCGGCgGgCgCGCGGCG-GAGAu -3'
miRNA:   3'- ggGgCGGCCGgC-G-GCGCCGCuCUCUc -5'
6484 3' -66.3 NC_001847.1 + 80691 0.66 0.443149
Target:  5'- gCgCCGgCGGCgGCUGCGGCuGGaAGAa -3'
miRNA:   3'- -GgGGCgGCCGgCGGCGCCGcUC-UCUc -5'
6484 3' -66.3 NC_001847.1 + 30252 0.66 0.443149
Target:  5'- -gUCGCUGGCggcguugcagcgCGCCGCGGCGcAGAcGAc -3'
miRNA:   3'- ggGGCGGCCG------------GCGGCGCCGC-UCU-CUc -5'
6484 3' -66.3 NC_001847.1 + 29145 0.66 0.443149
Target:  5'- -aCCGCUGcGCCGUCGCcugccgcgaGGCGcuGGAGg -3'
miRNA:   3'- ggGGCGGC-CGGCGGCG---------CCGCucUCUC- -5'
6484 3' -66.3 NC_001847.1 + 38467 0.66 0.443149
Target:  5'- aCCCGCCGGCCcCCGCGcaCGAc---- -3'
miRNA:   3'- gGGGCGGCCGGcGGCGCc-GCUcucuc -5'
6484 3' -66.3 NC_001847.1 + 38494 0.66 0.443149
Target:  5'- aCCCGCCGGCCcCCGCGcaCGAc---- -3'
miRNA:   3'- gGGGCGGCCGGcGGCGCc-GCUcucuc -5'
6484 3' -66.3 NC_001847.1 + 131958 0.66 0.443149
Target:  5'- -aCCGCUGcGCCGUCGCcugccgcgaGGCGcuGGAGg -3'
miRNA:   3'- ggGGCGGC-CGGCGGCG---------CCGCucUCUC- -5'
6484 3' -66.3 NC_001847.1 + 85936 0.66 0.443149
Target:  5'- gCCCGCgGGCC-CCG-GcGCGAGGGc- -3'
miRNA:   3'- gGGGCGgCCGGcGGCgC-CGCUCUCuc -5'
6484 3' -66.3 NC_001847.1 + 32482 0.66 0.434753
Target:  5'- cCCCCGCCcucgcGGCCGCuCcCGGCGcgucaccccGAGAc -3'
miRNA:   3'- -GGGGCGG-----CCGGCG-GcGCCGCu--------CUCUc -5'
6484 3' -66.3 NC_001847.1 + 61170 0.66 0.434753
Target:  5'- cCCUCGCacuucuggagggCGGCUagGUCGCcGUGAGAGAGg -3'
miRNA:   3'- -GGGGCG------------GCCGG--CGGCGcCGCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 134666 0.66 0.434753
Target:  5'- gCCCCGCC-GCCGCCGCuGCu------ -3'
miRNA:   3'- -GGGGCGGcCGGCGGCGcCGcucucuc -5'
6484 3' -66.3 NC_001847.1 + 93821 0.66 0.434753
Target:  5'- uCCCCGCUGGacuuugCGCCGC-GCGAGc--- -3'
miRNA:   3'- -GGGGCGGCCg-----GCGGCGcCGCUCucuc -5'
6484 3' -66.3 NC_001847.1 + 132365 0.66 0.434753
Target:  5'- gCCCUGgaGGCCGCC--GGCGGGGGc- -3'
miRNA:   3'- -GGGGCggCCGGCGGcgCCGCUCUCuc -5'
6484 3' -66.3 NC_001847.1 + 3535 0.66 0.434753
Target:  5'- -gCCGacuaCGGCCGCgagCGCGGCGGcggcguaguuGAGGGu -3'
miRNA:   3'- ggGGCg---GCCGGCG---GCGCCGCU----------CUCUC- -5'
6484 3' -66.3 NC_001847.1 + 64349 0.66 0.434753
Target:  5'- cCCCUcCCGGCCccGCCGCGaaGCGAGccgccAGAc -3'
miRNA:   3'- -GGGGcGGCCGG--CGGCGC--CGCUC-----UCUc -5'
6484 3' -66.3 NC_001847.1 + 84333 0.66 0.434753
Target:  5'- cCCCCGuaaaaccguaCCGGCCGCaGCGccGCGAGGu-- -3'
miRNA:   3'- -GGGGC----------GGCCGGCGgCGC--CGCUCUcuc -5'
6484 3' -66.3 NC_001847.1 + 5239 0.66 0.434753
Target:  5'- gCUCCGUgcaGGUCuCCGCGG-GGGAGGGg -3'
miRNA:   3'- -GGGGCGg--CCGGcGGCGCCgCUCUCUC- -5'
6484 3' -66.3 NC_001847.1 + 134049 0.66 0.434753
Target:  5'- gCgCCGCCcGCgGCCGCGGCGcccggcguGGAcuGGGa -3'
miRNA:   3'- -GgGGCGGcCGgCGGCGCCGC--------UCU--CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.