miRNA display CGI


Results 41 - 60 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6485 5' -68.2 NC_001847.1 + 81529 0.66 0.374193
Target:  5'- aGUCUGcgcauccguucGGCGGCCgagCUcGCCGGcCCCGCg -3'
miRNA:   3'- -CAGAC-----------CCGCCGG---GGcCGGCC-GGGUGg -5'
6485 5' -68.2 NC_001847.1 + 27971 0.66 0.36666
Target:  5'- gGUCgcggugGaGGCGGCCgCGGCCGGggcggaggCgGCCg -3'
miRNA:   3'- -CAGa-----C-CCGCCGGgGCCGGCCg-------GgUGG- -5'
6485 5' -68.2 NC_001847.1 + 109178 0.66 0.374193
Target:  5'- gGUCUGaccgcccGCGGCCCCcuUUGGCCCuaGCCg -3'
miRNA:   3'- -CAGACc------CGCCGGGGccGGCCGGG--UGG- -5'
6485 5' -68.2 NC_001847.1 + 129210 0.66 0.374193
Target:  5'- ---cGGGCGGgCCCGucguccGCCG-CCCAUCc -3'
miRNA:   3'- cagaCCCGCCgGGGC------CGGCcGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 35388 0.66 0.374193
Target:  5'- ---cGcGGCGGCUCacugccgGGCCGGCCaacgCACCc -3'
miRNA:   3'- cagaC-CCGCCGGGg------CCGGCCGG----GUGG- -5'
6485 5' -68.2 NC_001847.1 + 61940 0.66 0.36666
Target:  5'- cGUCaGcGGCGGCgcggCCCGcGCgGGCCgACUc -3'
miRNA:   3'- -CAGaC-CCGCCG----GGGC-CGgCCGGgUGG- -5'
6485 5' -68.2 NC_001847.1 + 53856 0.66 0.36666
Target:  5'- -gCU-GGCGGCgCUGGCgGcGCCgACCg -3'
miRNA:   3'- caGAcCCGCCGgGGCCGgC-CGGgUGG- -5'
6485 5' -68.2 NC_001847.1 + 64446 0.66 0.359232
Target:  5'- ---cGGGC-GCCCCcGCCGccGCCCGCg -3'
miRNA:   3'- cagaCCCGcCGGGGcCGGC--CGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 58685 0.66 0.36442
Target:  5'- ---cGGGCGGCa--GGCUGGCcauggcgcuggcauCCACCg -3'
miRNA:   3'- cagaCCCGCCGgggCCGGCCG--------------GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 96997 0.66 0.36442
Target:  5'- cUCgGGGCGGCgcgccgcgcgaagaCUCGGugcCCGGCgCACCc -3'
miRNA:   3'- cAGaCCCGCCG--------------GGGCC---GGCCGgGUGG- -5'
6485 5' -68.2 NC_001847.1 + 32285 0.66 0.359232
Target:  5'- cGUCcgcgUGGcGCGGCCCCGcgacGCCgccgcggaacgGGaCCCGCUg -3'
miRNA:   3'- -CAG----ACC-CGCCGGGGC----CGG-----------CC-GGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 122411 0.66 0.373435
Target:  5'- -gCUGGGCcGCaCCCGGCCcuccaaaauccugGGCagcggCACCu -3'
miRNA:   3'- caGACCCGcCG-GGGCCGG-------------CCGg----GUGG- -5'
6485 5' -68.2 NC_001847.1 + 47769 0.66 0.36666
Target:  5'- uGUCcgcgaaGGCGGCCacggccgggugcUCGGCCaGGCCCucgGCCg -3'
miRNA:   3'- -CAGac----CCGCCGG------------GGCCGG-CCGGG---UGG- -5'
6485 5' -68.2 NC_001847.1 + 12936 0.66 0.35191
Target:  5'- ---aGGGCacccGGCCCCGGCuaguguggCGGCgCGCg -3'
miRNA:   3'- cagaCCCG----CCGGGGCCG--------GCCGgGUGg -5'
6485 5' -68.2 NC_001847.1 + 100622 0.66 0.36666
Target:  5'- ---cGGGCGGCgCaucGCCGGCgCCGuCCg -3'
miRNA:   3'- cagaCCCGCCGgGgc-CGGCCG-GGU-GG- -5'
6485 5' -68.2 NC_001847.1 + 120182 0.66 0.374193
Target:  5'- cUCUGgauGGUGGUgCUGGCCGcgcgagcggcGCCCGCUc -3'
miRNA:   3'- cAGAC---CCGCCGgGGCCGGC----------CGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 105960 0.66 0.365912
Target:  5'- ----cGGCGGCgCCGGCggcgcggCGGgCCGCCu -3'
miRNA:   3'- cagacCCGCCGgGGCCG-------GCCgGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 127088 0.66 0.374193
Target:  5'- cUCUGcGcGCgGGCCgCgCGGCUuugGGUCCACCg -3'
miRNA:   3'- cAGAC-C-CG-CCGG-G-GCCGG---CCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 96576 0.66 0.374193
Target:  5'- -cCUccGCGGCUCCGGCagcaGGCgCUGCCa -3'
miRNA:   3'- caGAccCGCCGGGGCCGg---CCG-GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 59318 0.66 0.36666
Target:  5'- ---gGGcGCGGCgCCGGCgGcGCCgUACCa -3'
miRNA:   3'- cagaCC-CGCCGgGGCCGgC-CGG-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.