miRNA display CGI


Results 41 - 60 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6485 5' -68.2 NC_001847.1 + 77472 0.79 0.041425
Target:  5'- ---cGGGCgccgGGCgCCCGGcCCGGCCCGCCg -3'
miRNA:   3'- cagaCCCG----CCG-GGGCC-GGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 64052 0.8 0.037431
Target:  5'- -cCUGGGCGcuggacGCCCUGGCCGGCCgccuCGCCg -3'
miRNA:   3'- caGACCCGC------CGGGGCCGGCCGG----GUGG- -5'
6485 5' -68.2 NC_001847.1 + 56857 0.8 0.036493
Target:  5'- cGUCUGcgcccGGCGGCCCgggcgCGGCCacgGGCCCGCCg -3'
miRNA:   3'- -CAGAC-----CCGCCGGG-----GCCGG---CCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 134260 0.81 0.032139
Target:  5'- ---cGcGGCGGCCCCGGCgCGGgCCGCCg -3'
miRNA:   3'- cagaC-CCGCCGGGGCCG-GCCgGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 100837 0.84 0.019636
Target:  5'- ---cGGGCGGCUCCGGCCagggccggagcgccGGCCCGCCg -3'
miRNA:   3'- cagaCCCGCCGGGGCCGG--------------CCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 22373 0.73 0.113317
Target:  5'- -aCUGGGacgaGGCCCCcgcggGGCCGGggucgcgacggacaaCCCGCCa -3'
miRNA:   3'- caGACCCg---CCGGGG-----CCGGCC---------------GGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 26495 0.73 0.113317
Target:  5'- cGUCc--GCGGCCCCGGCCacuucugcagcgucGCCCGCCg -3'
miRNA:   3'- -CAGaccCGCCGGGGCCGGc-------------CGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 482 0.72 0.142865
Target:  5'- cGUCaUGGGUGcccgcGCCuCCGcgccugcuGCCGGCCCGCCc -3'
miRNA:   3'- -CAG-ACCCGC-----CGG-GGC--------CGGCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 83615 0.72 0.139485
Target:  5'- -cCUGGGCGccGCCCCcgccuGCCGGCgCCGCa -3'
miRNA:   3'- caGACCCGC--CGGGGc----CGGCCG-GGUGg -5'
6485 5' -68.2 NC_001847.1 + 105153 0.72 0.136178
Target:  5'- ---aGcGGCGGCuCCCGccgcGCCGGCCCgGCCg -3'
miRNA:   3'- cagaC-CCGCCG-GGGC----CGGCCGGG-UGG- -5'
6485 5' -68.2 NC_001847.1 + 102238 0.72 0.136178
Target:  5'- cGUCc--GCGGCCCCGgcuuccccGCCGGCCC-CCg -3'
miRNA:   3'- -CAGaccCGCCGGGGC--------CGGCCGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 52458 0.72 0.1352
Target:  5'- -aCUGGGCGGCCCUGGUgGaggacgaguucuucGCCCAg- -3'
miRNA:   3'- caGACCCGCCGGGGCCGgC--------------CGGGUgg -5'
6485 5' -68.2 NC_001847.1 + 52745 0.72 0.132944
Target:  5'- --aUGGGC-GUCCCGGacaagCGGCCCGCCc -3'
miRNA:   3'- cagACCCGcCGGGGCCg----GCCGGGUGG- -5'
6485 5' -68.2 NC_001847.1 + 132594 0.72 0.132944
Target:  5'- ---aGGGCcGCCCCGGcCCGGCggcgggagcgCCGCCg -3'
miRNA:   3'- cagaCCCGcCGGGGCC-GGCCG----------GGUGG- -5'
6485 5' -68.2 NC_001847.1 + 52583 0.73 0.126687
Target:  5'- cUCgagGcGGCGGCCgaGGCCGaGCCCGCg -3'
miRNA:   3'- cAGa--C-CCGCCGGggCCGGC-CGGGUGg -5'
6485 5' -68.2 NC_001847.1 + 16235 0.73 0.126687
Target:  5'- cGUCccGGccuCGGCCCCGGCCccGGCCCcgGCCc -3'
miRNA:   3'- -CAGa-CCc--GCCGGGGCCGG--CCGGG--UGG- -5'
6485 5' -68.2 NC_001847.1 + 71075 0.73 0.120703
Target:  5'- -gCU-GGCGGCgCUCGGCCGGCgCgGCCa -3'
miRNA:   3'- caGAcCCGCCG-GGGCCGGCCG-GgUGG- -5'
6485 5' -68.2 NC_001847.1 + 134912 0.73 0.117811
Target:  5'- cGUCgGGGCgcgaGGCCCgGGCUcgGGCCC-CCg -3'
miRNA:   3'- -CAGaCCCG----CCGGGgCCGG--CCGGGuGG- -5'
6485 5' -68.2 NC_001847.1 + 54589 0.73 0.117811
Target:  5'- -gCUGGGCGGCgCUGGCgGcGCgCGCCc -3'
miRNA:   3'- caGACCCGCCGgGGCCGgC-CGgGUGG- -5'
6485 5' -68.2 NC_001847.1 + 15407 0.73 0.117811
Target:  5'- -gCUGGGCGGCCCUGGagcgCGGCaCgGCg -3'
miRNA:   3'- caGACCCGCCGGGGCCg---GCCG-GgUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.