miRNA display CGI


Results 81 - 100 of 371 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 43128 0.67 0.913051
Target:  5'- -cGCAGAcGGCGCGGGcccGCGGGCg---- -3'
miRNA:   3'- uaCGUUU-UCGCGUUC---CGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 20738 0.67 0.913051
Target:  5'- -gGaCAGAccGGCgGUGAGGCGGGCCu--- -3'
miRNA:   3'- uaC-GUUU--UCG-CGUUCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 18082 0.67 0.913051
Target:  5'- -gGCGGAGGCG-AGGGCGaGGCUu--- -3'
miRNA:   3'- uaCGUUUUCGCgUUCCGC-CCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 17492 0.67 0.913051
Target:  5'- -gGCAAGuuGCGgGGgucGGCGGGCgAAGGg -3'
miRNA:   3'- uaCGUUUu-CGCgUU---CCGCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 119729 0.67 0.913051
Target:  5'- --aCGGAGGCGCcgAGGGCGaGCCGAAa -3'
miRNA:   3'- uacGUUUUCGCG--UUCCGCcCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 134456 0.67 0.913051
Target:  5'- uUGCGGcAGgGCAagauggcauAGGCGcGGCCAAc- -3'
miRNA:   3'- uACGUUuUCgCGU---------UCCGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 53833 0.67 0.913051
Target:  5'- -aGCGGGGGCGCugaagagccGGCgcggGGGUCAGGGg -3'
miRNA:   3'- uaCGUUUUCGCGuu-------CCG----CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 125813 0.67 0.913051
Target:  5'- -nGCGGgcGUGCAgcucaaagcGGGuCGGGCCGAGu -3'
miRNA:   3'- uaCGUUuuCGCGU---------UCC-GCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 93820 0.67 0.912428
Target:  5'- -aGCGAGAGCuCGAaccggccGGCGGcGCCGGAa -3'
miRNA:   3'- uaCGUUUUCGcGUU-------CCGCC-CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 45497 0.67 0.906704
Target:  5'- -aGCAAAcGCcCGGGGCGGGCg---- -3'
miRNA:   3'- uaCGUUUuCGcGUUCCGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 110129 0.67 0.906704
Target:  5'- uGUGUA--AGUGCAcagagAGGCGGGgCGAAa -3'
miRNA:   3'- -UACGUuuUCGCGU-----UCCGCCCgGUUUc -5'
6486 3' -53.4 NC_001847.1 + 34076 0.67 0.906704
Target:  5'- -gGCAcgcGGAGCGCGuGGCGGccGCCGu-- -3'
miRNA:   3'- uaCGU---UUUCGCGUuCCGCC--CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 61777 0.67 0.906704
Target:  5'- --aCGGuGGCGCGgugcGGGUGGGCCGGGu -3'
miRNA:   3'- uacGUUuUCGCGU----UCCGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 7316 0.67 0.906704
Target:  5'- uGUGUA--AGUGCAcagagAGGCGGGgCGAAa -3'
miRNA:   3'- -UACGUuuUCGCGU-----UCCGCCCgGUUUc -5'
6486 3' -53.4 NC_001847.1 + 24341 0.67 0.906704
Target:  5'- gAUGUccAAGUGgAGGGgGGGCCcGAGc -3'
miRNA:   3'- -UACGuuUUCGCgUUCCgCCCGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 127154 0.67 0.906704
Target:  5'- gAUGUccAAGUGgAGGGgGGGCCcGAGc -3'
miRNA:   3'- -UACGuuUUCGCgUUCCgCCCGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 18666 0.67 0.906704
Target:  5'- -gGCGGGAGUGCAGGuacGCGaGGCCc--- -3'
miRNA:   3'- uaCGUUUUCGCGUUC---CGC-CCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 42733 0.67 0.906704
Target:  5'- -gGCGGccGCGCGGgcGGCGGGgCGGAc -3'
miRNA:   3'- uaCGUUuuCGCGUU--CCGCCCgGUUUc -5'
6486 3' -53.4 NC_001847.1 + 125793 0.67 0.906704
Target:  5'- -gGCA--AGCGagucGGCGGGCCGGc- -3'
miRNA:   3'- uaCGUuuUCGCguu-CCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 91456 0.67 0.902771
Target:  5'- -cGCGGGAGCGUccacacgaggucgucGAgcaccugcGGCGGGCCAc-- -3'
miRNA:   3'- uaCGUUUUCGCG---------------UU--------CCGCCCGGUuuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.