miRNA display CGI


Results 61 - 80 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 30169 0.66 0.919135
Target:  5'- gGUGCGu-GGCGCucGGCGgaccuGGCCGAc- -3'
miRNA:   3'- -UACGUuuUCGCGuuCCGC-----CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 128809 0.66 0.919135
Target:  5'- -gGCGGgcGGGCGCGcAGGCgcgcacaaaaaGGGCCAAc- -3'
miRNA:   3'- uaCGUU--UUCGCGU-UCCG-----------CCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 63454 0.66 0.919135
Target:  5'- -cGCAGAcGCGgAcgcGGCGGGCCu--- -3'
miRNA:   3'- uaCGUUUuCGCgUu--CCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 29325 0.66 0.919135
Target:  5'- -aGCGAgccgcGAGCGCGAGugcGCGGGCg---- -3'
miRNA:   3'- uaCGUU-----UUCGCGUUC---CGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 53590 0.66 0.919135
Target:  5'- -cGCAGcuGCGCGGGGCcGGCgAGc- -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGcCCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 25996 0.66 0.919135
Target:  5'- -gGCGGgcGGGCGCGcAGGCgcgcacaaaaaGGGCCAAc- -3'
miRNA:   3'- uaCGUU--UUCGCGU-UCCG-----------CCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 109746 0.66 0.919135
Target:  5'- -aGCucGAGgGCGGGGCgaucgagucuauGGGCCAGu- -3'
miRNA:   3'- uaCGuuUUCgCGUUCCG------------CCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 27858 0.66 0.919135
Target:  5'- -cGCcAGGGaCGCGGGG-GGcGCCGAGGa -3'
miRNA:   3'- uaCGuUUUC-GCGUUCCgCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 130671 0.66 0.919135
Target:  5'- -cGCcAGGGaCGCGGGG-GGcGCCGAGGa -3'
miRNA:   3'- uaCGuUUUC-GCGUUCCgCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 71518 0.66 0.919135
Target:  5'- -cGCGGAGGCaGUA--GCGGGCgAAGGg -3'
miRNA:   3'- uaCGUUUUCG-CGUucCGCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 125574 0.66 0.919135
Target:  5'- -cGCGGccGCGgGcGGCGGGCUGGAc -3'
miRNA:   3'- uaCGUUuuCGCgUuCCGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 107700 0.66 0.919135
Target:  5'- cUGCGGuuggcGGCGCucgcGGGCGGGCa---- -3'
miRNA:   3'- uACGUUu----UCGCGu---UCCGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 82093 0.66 0.918538
Target:  5'- -gGCc-AAGCGCGGGGCcaggcucGGaGCCGAGGc -3'
miRNA:   3'- uaCGuuUUCGCGUUCCG-------CC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 121187 0.66 0.918538
Target:  5'- cAUGCGGGAgcggcacuuGCGCGGGGCGGccccccuGCCGcGGc -3'
miRNA:   3'- -UACGUUUU---------CGCGUUCCGCC-------CGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 54548 0.67 0.913051
Target:  5'- -cGCAGAcGGCG-GGGGCGGcGCgGAGGa -3'
miRNA:   3'- uaCGUUU-UCGCgUUCCGCC-CGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 119729 0.67 0.913051
Target:  5'- --aCGGAGGCGCcgAGGGCGaGCCGAAa -3'
miRNA:   3'- uacGUUUUCGCG--UUCCGCcCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 55144 0.67 0.913051
Target:  5'- -cGCGcgGGCGCGGGGCGucaccGCCGc-- -3'
miRNA:   3'- uaCGUuuUCGCGUUCCGCc----CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 29201 0.67 0.913051
Target:  5'- uUGCuGGGGCuGCccgacGGCGGGCUGGAGc -3'
miRNA:   3'- uACGuUUUCG-CGuu---CCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 70369 0.67 0.913051
Target:  5'- -aGCGAGggGGCGcCGGGGCGcgagcucgcgcuGGCCAAGa -3'
miRNA:   3'- uaCGUUU--UCGC-GUUCCGC------------CCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 12494 0.67 0.913051
Target:  5'- -gGCGGGGGCGgcCAAGaaccCGGGCCAGAc -3'
miRNA:   3'- uaCGUUUUCGC--GUUCc---GCCCGGUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.