miRNA display CGI


Results 41 - 60 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 39419 0.66 0.930511
Target:  5'- --cCGAAAGCaGCGAGGgGGGCgCGuGGg -3'
miRNA:   3'- uacGUUUUCG-CGUUCCgCCCG-GUuUC- -5'
6486 3' -53.4 NC_001847.1 + 17899 0.66 0.930511
Target:  5'- -aGCAGGauuAGgGCGAcGGCGG-CCAAGGu -3'
miRNA:   3'- uaCGUUU---UCgCGUU-CCGCCcGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 124644 0.66 0.930511
Target:  5'- -cGCAGcAGCGCGGGGCc-GUCGGGGa -3'
miRNA:   3'- uaCGUUuUCGCGUUCCGccCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 66490 0.66 0.930511
Target:  5'- -cGCAGGGGCgGgGAGGCggugaaguuuGGGCUGGAGc -3'
miRNA:   3'- uaCGUUUUCG-CgUUCCG----------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 135135 0.66 0.930511
Target:  5'- -cGCAGGGGgccCGCGcGGCGcGGCgCGGAGg -3'
miRNA:   3'- uaCGUUUUC---GCGUuCCGC-CCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 132451 0.66 0.930511
Target:  5'- -gGCcGGGGCGCcgcGGGCGGacCCGGAGg -3'
miRNA:   3'- uaCGuUUUCGCGu--UCCGCCc-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 18728 0.66 0.930511
Target:  5'- -aGCccAAGCGCGcGGCccgGGGcCCAGAGc -3'
miRNA:   3'- uaCGuuUUCGCGUuCCG---CCC-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 83932 0.66 0.928872
Target:  5'- -aGCAGGGcccgcucgaagugcGCGCGGGGCcgGGGgCGGAGa -3'
miRNA:   3'- uaCGUUUU--------------CGCGUUCCG--CCCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 83268 0.66 0.924955
Target:  5'- -cGCAGuGGCGCAgcaccAGGuuGGCCAu-- -3'
miRNA:   3'- uaCGUUuUCGCGU-----UCCgcCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 112045 0.66 0.924955
Target:  5'- -cGCGGuGGCGCGc-GCGGGCUAcguaGAGg -3'
miRNA:   3'- uaCGUUuUCGCGUucCGCCCGGU----UUC- -5'
6486 3' -53.4 NC_001847.1 + 55084 0.66 0.924955
Target:  5'- -gGCGGccGCGgGGGGCGGGUgGGc- -3'
miRNA:   3'- uaCGUUuuCGCgUUCCGCCCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 95342 0.66 0.924955
Target:  5'- -cGCAgGGGGCGCAgccagGGGagcgGGGCCAGGc -3'
miRNA:   3'- uaCGU-UUUCGCGU-----UCCg---CCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 25371 0.66 0.924955
Target:  5'- -gGCAGGGG-GCGGcGGCaGGGCgGAGGg -3'
miRNA:   3'- uaCGUUUUCgCGUU-CCG-CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 31632 0.66 0.924955
Target:  5'- -cGCGcuAGUGCAcuuuguuucGGCGGGcCCGGAGc -3'
miRNA:   3'- uaCGUuuUCGCGUu--------CCGCCC-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 94480 0.66 0.924955
Target:  5'- uGUGCGgcaaaguacagAAGGcCGCGAGGCGcGGCgGAc- -3'
miRNA:   3'- -UACGU-----------UUUC-GCGUUCCGC-CCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 128184 0.66 0.924955
Target:  5'- -gGCAGGGG-GCGGcGGCaGGGCgGAGGg -3'
miRNA:   3'- uaCGUUUUCgCGUU-CCG-CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 127917 0.66 0.924385
Target:  5'- -aGCAAgcGAGCGCAgagagaagagagcGGGCGGcgGCCGcGGc -3'
miRNA:   3'- uaCGUU--UUCGCGU-------------UCCGCC--CGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 90727 0.66 0.924385
Target:  5'- -cGCGAAcgcagccgcucgcGGCGCGuGGcCGGGCCccGGg -3'
miRNA:   3'- uaCGUUU-------------UCGCGUuCC-GCCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 25104 0.66 0.924385
Target:  5'- -aGCAAgcGAGCGCAgagagaagagagcGGGCGGcgGCCGcGGc -3'
miRNA:   3'- uaCGUU--UUCGCGU-------------UCCGCC--CGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 11301 0.66 0.921495
Target:  5'- -cGCGAAgaugGGCGCGcccgccgaggccggcGGGCGGcuggcGCCGGAGc -3'
miRNA:   3'- uaCGUUU----UCGCGU---------------UCCGCC-----CGGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.