miRNA display CGI


Results 41 - 60 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 29638 0.66 0.930511
Target:  5'- -gGCcGGGGCGCcgcGGGCGGacCCGGAGg -3'
miRNA:   3'- uaCGuUUUCGCGu--UCCGCCc-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 59246 0.66 0.94083
Target:  5'- -gGCGAuGGCGCc-GGCcaGGGCCAu-- -3'
miRNA:   3'- uaCGUUuUCGCGuuCCG--CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 486 0.66 0.935802
Target:  5'- -aGCGGcGGCgGCGGGGCGGccgcgcGCCAAc- -3'
miRNA:   3'- uaCGUUuUCG-CGUUCCGCC------CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 132572 0.66 0.935802
Target:  5'- -gGCGGccGCGC-AGGCGcccgcGCCGAAGa -3'
miRNA:   3'- uaCGUUuuCGCGuUCCGCc----CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 96076 0.66 0.935802
Target:  5'- -aGCcggcGGCgGCAAuGGCGGaGCCGGAGu -3'
miRNA:   3'- uaCGuuu-UCG-CGUU-CCGCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 81878 0.66 0.940339
Target:  5'- -cGCcuGGGCGCGcagcgccccgccgAGGCGGcGCCGcAGc -3'
miRNA:   3'- uaCGuuUUCGCGU-------------UCCGCC-CGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 27267 0.66 0.935802
Target:  5'- -cGCGAGAGCcggauGUGAGGCugcccgccGGGCgAGAGg -3'
miRNA:   3'- uaCGUUUUCG-----CGUUCCG--------CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 22404 0.66 0.94083
Target:  5'- -cGCGGcGAGCGUgcucguccgcgGGGGCGgGGCCcGAGa -3'
miRNA:   3'- uaCGUU-UUCGCG-----------UUCCGC-CCGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 103299 0.66 0.935802
Target:  5'- -aGCGGcGGCgGCGGGGCGGccgcgcGCCAAc- -3'
miRNA:   3'- uaCGUUuUCG-CGUUCCGCC------CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 29435 0.66 0.935285
Target:  5'- -aGCG--AGCGCuGGGGCGuggcgccgcccgcGGCCGAAGc -3'
miRNA:   3'- uaCGUuuUCGCG-UUCCGC-------------CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 32941 0.66 0.935802
Target:  5'- -gGCGGcGGgGCcGGGgGGGCgGAGGa -3'
miRNA:   3'- uaCGUUuUCgCGuUCCgCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 112045 0.66 0.924955
Target:  5'- -cGCGGuGGCGCGc-GCGGGCUAcguaGAGg -3'
miRNA:   3'- uaCGUUuUCGCGUucCGCCCGGU----UUC- -5'
6486 3' -53.4 NC_001847.1 + 124644 0.66 0.930511
Target:  5'- -cGCAGcAGCGCGGGGCc-GUCGGGGa -3'
miRNA:   3'- uaCGUUuUCGCGUUCCGccCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 36847 0.66 0.94083
Target:  5'- -gGCGGAcguGCGCucGGCGGcgGCCGAGc -3'
miRNA:   3'- uaCGUUUu--CGCGuuCCGCC--CGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 52102 0.66 0.935802
Target:  5'- -cGCGGcccAAGCGCAcuAGcggccGCGGGCCGGc- -3'
miRNA:   3'- uaCGUU---UUCGCGU--UC-----CGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 33693 0.66 0.940339
Target:  5'- -cGCAGGcgcucgcGGCGCGGcGGCGcguGGCCGAGc -3'
miRNA:   3'- uaCGUUU-------UCGCGUU-CCGC---CCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 109268 0.66 0.935802
Target:  5'- -gGCAGGGGCgggcugcaaGCGAGGgGGGCgAgcAAGa -3'
miRNA:   3'- uaCGUUUUCG---------CGUUCCgCCCGgU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 37124 0.66 0.935802
Target:  5'- cAUGCucuGGGGCGCGcacgcccaGCGGGCCuuuGGGg -3'
miRNA:   3'- -UACGu--UUUCGCGUuc------CGCCCGGu--UUC- -5'
6486 3' -53.4 NC_001847.1 + 106073 0.66 0.935802
Target:  5'- -gGCAGGGGCGCcGGcgccGCGcGGCCGGc- -3'
miRNA:   3'- uaCGUUUUCGCGuUC----CGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 21558 0.66 0.94083
Target:  5'- uAUGaCAAGGGC-CGGGGagaGGGCgGGAGa -3'
miRNA:   3'- -UAC-GUUUUCGcGUUCCg--CCCGgUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.