miRNA display CGI


Results 21 - 40 of 371 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 55084 0.66 0.924955
Target:  5'- -gGCGGccGCGgGGGGCGGGUgGGc- -3'
miRNA:   3'- uaCGUUuuCGCgUUCCGCCCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 127917 0.66 0.924385
Target:  5'- -aGCAAgcGAGCGCAgagagaagagagcGGGCGGcgGCCGcGGc -3'
miRNA:   3'- uaCGUU--UUCGCGU-------------UCCGCC--CGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 106631 0.66 0.94083
Target:  5'- -gGCGGcGGCGCGcuGcCGGGCCAc-- -3'
miRNA:   3'- uaCGUUuUCGCGUucC-GCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 5881 0.66 0.94083
Target:  5'- -aGCGcuGcGCGCAGGGCGGccgcGCCGu-- -3'
miRNA:   3'- uaCGUuuU-CGCGUUCCGCC----CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 8129 0.66 0.94083
Target:  5'- -cGC---GGgGC-GGGCGGGCCGAc- -3'
miRNA:   3'- uaCGuuuUCgCGuUCCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 59246 0.66 0.94083
Target:  5'- -gGCGAuGGCGCc-GGCcaGGGCCAu-- -3'
miRNA:   3'- uaCGUUuUCGCGuuCCG--CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 128184 0.66 0.924955
Target:  5'- -gGCAGGGG-GCGGcGGCaGGGCgGAGGg -3'
miRNA:   3'- uaCGUUUUCgCGUU-CCG-CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 22404 0.66 0.94083
Target:  5'- -cGCGGcGAGCGUgcucguccgcgGGGGCGgGGCCcGAGa -3'
miRNA:   3'- uaCGUU-UUCGCG-----------UUCCGC-CCGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 19077 0.66 0.94083
Target:  5'- cGUGCGAAAGUGCGcccCGGuGCCcGAGg -3'
miRNA:   3'- -UACGUUUUCGCGUuccGCC-CGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 27267 0.66 0.935802
Target:  5'- -cGCGAGAGCcggauGUGAGGCugcccgccGGGCgAGAGg -3'
miRNA:   3'- uaCGUUUUCG-----CGUUCCG--------CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 121187 0.66 0.918538
Target:  5'- cAUGCGGGAgcggcacuuGCGCGGGGCGGccccccuGCCGcGGc -3'
miRNA:   3'- -UACGUUUU---------CGCGUUCCGCC-------CGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 86038 0.66 0.935802
Target:  5'- cUGCGcuGGUuggGCGAGGCgcuggGGGCCAcGGa -3'
miRNA:   3'- uACGUuuUCG---CGUUCCG-----CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 132451 0.66 0.930511
Target:  5'- -gGCcGGGGCGCcgcGGGCGGacCCGGAGg -3'
miRNA:   3'- uaCGuUUUCGCGu--UCCGCCc-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 30169 0.66 0.919135
Target:  5'- gGUGCGu-GGCGCucGGCGgaccuGGCCGAc- -3'
miRNA:   3'- -UACGUuuUCGCGuuCCGC-----CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 29435 0.66 0.935285
Target:  5'- -aGCG--AGCGCuGGGGCGuggcgccgcccgcGGCCGAAGc -3'
miRNA:   3'- uaCGUuuUCGCG-UUCCGC-------------CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 106073 0.66 0.935802
Target:  5'- -gGCAGGGGCGCcGGcgccGCGcGGCCGGc- -3'
miRNA:   3'- uaCGUUUUCGCGuUC----CGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 123099 0.66 0.939349
Target:  5'- -cGCAGc-GCGCAGGGCGuccagcgcuccgccGGgCAGAGg -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGC--------------CCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 21558 0.66 0.94083
Target:  5'- uAUGaCAAGGGC-CGGGGagaGGGCgGGAGa -3'
miRNA:   3'- -UAC-GUUUUCGcGUUCCg--CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 124371 0.66 0.94083
Target:  5'- uAUGaCAAGGGC-CGGGGagaGGGCgGGAGa -3'
miRNA:   3'- -UAC-GUUUUCGcGUUCCg--CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 130671 0.66 0.919135
Target:  5'- -cGCcAGGGaCGCGGGG-GGcGCCGAGGa -3'
miRNA:   3'- uaCGuUUUC-GCGUUCCgCC-CGGUUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.