miRNA display CGI


Results 1 - 20 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 63454 0.66 0.919135
Target:  5'- -cGCAGAcGCGgAcgcGGCGGGCCu--- -3'
miRNA:   3'- uaCGUUUuCGCgUu--CCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 130671 0.66 0.919135
Target:  5'- -cGCcAGGGaCGCGGGG-GGcGCCGAGGa -3'
miRNA:   3'- uaCGuUUUC-GCGUUCCgCC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 30169 0.66 0.919135
Target:  5'- gGUGCGu-GGCGCucGGCGgaccuGGCCGAc- -3'
miRNA:   3'- -UACGUuuUCGCGuuCCGC-----CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 59406 0.66 0.934242
Target:  5'- -gGCGGAGGCGCGGcGGUcaucgcugcgccccGGGCCu--- -3'
miRNA:   3'- uaCGUUUUCGCGUU-CCG--------------CCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 29435 0.66 0.935285
Target:  5'- -aGCG--AGCGCuGGGGCGuggcgccgcccgcGGCCGAAGc -3'
miRNA:   3'- uaCGUuuUCGCG-UUCCGC-------------CCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 55084 0.66 0.924955
Target:  5'- -gGCGGccGCGgGGGGCGGGUgGGc- -3'
miRNA:   3'- uaCGUUuuCGCgUUCCGCCCGgUUuc -5'
6486 3' -53.4 NC_001847.1 + 121187 0.66 0.918538
Target:  5'- cAUGCGGGAgcggcacuuGCGCGGGGCGGccccccuGCCGcGGc -3'
miRNA:   3'- -UACGUUUU---------CGCGUUCCGCC-------CGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 132451 0.66 0.930511
Target:  5'- -gGCcGGGGCGCcgcGGGCGGacCCGGAGg -3'
miRNA:   3'- uaCGuUUUCGCGu--UCCGCCc-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 27267 0.66 0.935802
Target:  5'- -cGCGAGAGCcggauGUGAGGCugcccgccGGGCgAGAGg -3'
miRNA:   3'- uaCGUUUUCG-----CGUUCCG--------CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 103299 0.66 0.935802
Target:  5'- -aGCGGcGGCgGCGGGGCGGccgcgcGCCAAc- -3'
miRNA:   3'- uaCGUUuUCG-CGUUCCGCC------CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 128809 0.66 0.919135
Target:  5'- -gGCGGgcGGGCGCGcAGGCgcgcacaaaaaGGGCCAAc- -3'
miRNA:   3'- uaCGUU--UUCGCGU-UCCG-----------CCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 83932 0.66 0.928872
Target:  5'- -aGCAGGGcccgcucgaagugcGCGCGGGGCcgGGGgCGGAGa -3'
miRNA:   3'- uaCGUUUU--------------CGCGUUCCG--CCCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 29325 0.66 0.919135
Target:  5'- -aGCGAgccgcGAGCGCGAGugcGCGGGCg---- -3'
miRNA:   3'- uaCGUU-----UUCGCGUUC---CGCCCGguuuc -5'
6486 3' -53.4 NC_001847.1 + 31632 0.66 0.924955
Target:  5'- -cGCGcuAGUGCAcuuuguuucGGCGGGcCCGGAGc -3'
miRNA:   3'- uaCGUuuUCGCGUu--------CCGCCC-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 18728 0.66 0.930511
Target:  5'- -aGCccAAGCGCGcGGCccgGGGcCCAGAGc -3'
miRNA:   3'- uaCGuuUUCGCGUuCCG---CCC-GGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 135135 0.66 0.930511
Target:  5'- -cGCAGGGGgccCGCGcGGCGcGGCgCGGAGg -3'
miRNA:   3'- uaCGUUUUC---GCGUuCCGC-CCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 11301 0.66 0.921495
Target:  5'- -cGCGAAgaugGGCGCGcccgccgaggccggcGGGCGGcuggcGCCGGAGc -3'
miRNA:   3'- uaCGUUU----UCGCGU---------------UCCGCC-----CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 128184 0.66 0.924955
Target:  5'- -gGCAGGGG-GCGGcGGCaGGGCgGAGGg -3'
miRNA:   3'- uaCGUUUUCgCGUU-CCG-CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 86038 0.66 0.935802
Target:  5'- cUGCGcuGGUuggGCGAGGCgcuggGGGCCAcGGa -3'
miRNA:   3'- uACGUuuUCG---CGUUCCG-----CCCGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 127917 0.66 0.924385
Target:  5'- -aGCAAgcGAGCGCAgagagaagagagcGGGCGGcgGCCGcGGc -3'
miRNA:   3'- uaCGUU--UUCGCGU-------------UCCGCC--CGGUuUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.