miRNA display CGI


Results 1 - 20 of 371 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 59 0.68 0.846925
Target:  5'- -gGCGGAaauuucGGCGC--GGCGGGCCcGGGc -3'
miRNA:   3'- uaCGUUU------UCGCGuuCCGCCCGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 486 0.66 0.935802
Target:  5'- -aGCGGcGGCgGCGGGGCGGccgcgcGCCAAc- -3'
miRNA:   3'- uaCGUUuUCG-CGUUCCGCC------CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 1481 0.68 0.8633
Target:  5'- -gGCAGAGcCGCAGcGGCGGcGCCucGGg -3'
miRNA:   3'- uaCGUUUUcGCGUU-CCGCC-CGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 1539 0.76 0.441268
Target:  5'- -cGCGAAGGCGCc---CGGGCCGAAGa -3'
miRNA:   3'- uaCGUUUUCGCGuuccGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 2093 0.73 0.616092
Target:  5'- -cGCGGGGcccGCGCGGcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUUU---CGCGUU-CCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 2719 0.76 0.426189
Target:  5'- uUGCGAaccugccccaccacgGAGCGCAGGGCGGGagcgagCGAGGg -3'
miRNA:   3'- uACGUU---------------UUCGCGUUCCGCCCg-----GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 3151 0.68 0.855224
Target:  5'- -gGCGccGGCgGCGcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUuuUCG-CGUuCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 3260 0.66 0.935802
Target:  5'- -gGCAGGGGCGCcGGcgccGCGcGGCCGGc- -3'
miRNA:   3'- uaCGUUUUCGCGuUC----CGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 3818 0.66 0.94083
Target:  5'- -gGCGGcGGCGCGcuGcCGGGCCAc-- -3'
miRNA:   3'- uaCGUUuUCGCGUucC-GCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 3965 0.81 0.238114
Target:  5'- -aGCGccAGCGCGAGGUGGGCCGu-- -3'
miRNA:   3'- uaCGUuuUCGCGUUCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 3974 0.69 0.811654
Target:  5'- -gGCGAGGGCGCc-GG-GGGCCGGGc -3'
miRNA:   3'- uaCGUUUUCGCGuuCCgCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 5000 0.69 0.820765
Target:  5'- -cGCGgcAAAGCGCGGcggcGGCGGcGCgGAGGg -3'
miRNA:   3'- uaCGU--UUUCGCGUU----CCGCC-CGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 5150 0.69 0.802363
Target:  5'- -aGCAGGGGUGU---GCGGGCCAGGc -3'
miRNA:   3'- uaCGUUUUCGCGuucCGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 5666 0.74 0.520808
Target:  5'- -cGCccAGGCGCgAAGGUGGGCCGGc- -3'
miRNA:   3'- uaCGuuUUCGCG-UUCCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 5881 0.66 0.94083
Target:  5'- -aGCGcuGcGCGCAGGGCGGccgcGCCGu-- -3'
miRNA:   3'- uaCGUuuU-CGCGUUCCGCC----CGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 6094 0.7 0.753551
Target:  5'- -cGCGGAGGCGCGagacgcccgcgAGGCGcGGCgCGAGc -3'
miRNA:   3'- uaCGUUUUCGCGU-----------UCCGC-CCG-GUUUc -5'
6486 3' -53.4 NC_001847.1 + 6761 0.68 0.870371
Target:  5'- gGUGCGGccGGUGCGAGGCGccagcugcuccguGGCCAc-- -3'
miRNA:   3'- -UACGUUu-UCGCGUUCCGC-------------CCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 7316 0.67 0.906704
Target:  5'- uGUGUA--AGUGCAcagagAGGCGGGgCGAAa -3'
miRNA:   3'- -UACGUuuUCGCGU-----UCCGCCCgGUUUc -5'
6486 3' -53.4 NC_001847.1 + 7721 0.76 0.422467
Target:  5'- -gGCAuucAGGCGCAGGGCgcGGGCgCGGAGg -3'
miRNA:   3'- uaCGUu--UUCGCGUUCCG--CCCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 8111 0.73 0.616092
Target:  5'- -gGCGccAGCGCAGGcGCGGGgccCCAGGGg -3'
miRNA:   3'- uaCGUuuUCGCGUUC-CGCCC---GGUUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.