Results 1 - 20 of 371 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 59 | 0.68 | 0.846925 |
Target: 5'- -gGCGGAaauuucGGCGC--GGCGGGCCcGGGc -3' miRNA: 3'- uaCGUUU------UCGCGuuCCGCCCGGuUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 486 | 0.66 | 0.935802 |
Target: 5'- -aGCGGcGGCgGCGGGGCGGccgcgcGCCAAc- -3' miRNA: 3'- uaCGUUuUCG-CGUUCCGCC------CGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 1481 | 0.68 | 0.8633 |
Target: 5'- -gGCAGAGcCGCAGcGGCGGcGCCucGGg -3' miRNA: 3'- uaCGUUUUcGCGUU-CCGCC-CGGuuUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 1539 | 0.76 | 0.441268 |
Target: 5'- -cGCGAAGGCGCc---CGGGCCGAAGa -3' miRNA: 3'- uaCGUUUUCGCGuuccGCCCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 2093 | 0.73 | 0.616092 |
Target: 5'- -cGCGGGGcccGCGCGGcGGCGGGCCGc-- -3' miRNA: 3'- uaCGUUUU---CGCGUU-CCGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 2719 | 0.76 | 0.426189 |
Target: 5'- uUGCGAaccugccccaccacgGAGCGCAGGGCGGGagcgagCGAGGg -3' miRNA: 3'- uACGUU---------------UUCGCGUUCCGCCCg-----GUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 3151 | 0.68 | 0.855224 |
Target: 5'- -gGCGccGGCgGCGcGGCGGGCCGc-- -3' miRNA: 3'- uaCGUuuUCG-CGUuCCGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 3260 | 0.66 | 0.935802 |
Target: 5'- -gGCAGGGGCGCcGGcgccGCGcGGCCGGc- -3' miRNA: 3'- uaCGUUUUCGCGuUC----CGC-CCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 3818 | 0.66 | 0.94083 |
Target: 5'- -gGCGGcGGCGCGcuGcCGGGCCAc-- -3' miRNA: 3'- uaCGUUuUCGCGUucC-GCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 3965 | 0.81 | 0.238114 |
Target: 5'- -aGCGccAGCGCGAGGUGGGCCGu-- -3' miRNA: 3'- uaCGUuuUCGCGUUCCGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 3974 | 0.69 | 0.811654 |
Target: 5'- -gGCGAGGGCGCc-GG-GGGCCGGGc -3' miRNA: 3'- uaCGUUUUCGCGuuCCgCCCGGUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 5000 | 0.69 | 0.820765 |
Target: 5'- -cGCGgcAAAGCGCGGcggcGGCGGcGCgGAGGg -3' miRNA: 3'- uaCGU--UUUCGCGUU----CCGCC-CGgUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 5150 | 0.69 | 0.802363 |
Target: 5'- -aGCAGGGGUGU---GCGGGCCAGGc -3' miRNA: 3'- uaCGUUUUCGCGuucCGCCCGGUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 5666 | 0.74 | 0.520808 |
Target: 5'- -cGCccAGGCGCgAAGGUGGGCCGGc- -3' miRNA: 3'- uaCGuuUUCGCG-UUCCGCCCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 5881 | 0.66 | 0.94083 |
Target: 5'- -aGCGcuGcGCGCAGGGCGGccgcGCCGu-- -3' miRNA: 3'- uaCGUuuU-CGCGUUCCGCC----CGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 6094 | 0.7 | 0.753551 |
Target: 5'- -cGCGGAGGCGCGagacgcccgcgAGGCGcGGCgCGAGc -3' miRNA: 3'- uaCGUUUUCGCGU-----------UCCGC-CCG-GUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 6761 | 0.68 | 0.870371 |
Target: 5'- gGUGCGGccGGUGCGAGGCGccagcugcuccguGGCCAc-- -3' miRNA: 3'- -UACGUUu-UCGCGUUCCGC-------------CCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 7316 | 0.67 | 0.906704 |
Target: 5'- uGUGUA--AGUGCAcagagAGGCGGGgCGAAa -3' miRNA: 3'- -UACGUuuUCGCGU-----UCCGCCCgGUUUc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 7721 | 0.76 | 0.422467 |
Target: 5'- -gGCAuucAGGCGCAGGGCgcGGGCgCGGAGg -3' miRNA: 3'- uaCGUu--UUCGCGUUCCG--CCCG-GUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 8111 | 0.73 | 0.616092 |
Target: 5'- -gGCGccAGCGCAGGcGCGGGgccCCAGGGg -3' miRNA: 3'- uaCGUuuUCGCGUUC-CGCCC---GGUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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