Results 1 - 20 of 371 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 135135 | 0.66 | 0.930511 |
Target: 5'- -cGCAGGGGgccCGCGcGGCGcGGCgCGGAGg -3' miRNA: 3'- uaCGUUUUC---GCGUuCCGC-CCG-GUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 135034 | 0.69 | 0.820765 |
Target: 5'- -gGCcGGGGCGCGGGGCGccGGacCCAGGGg -3' miRNA: 3'- uaCGuUUUCGCGUUCCGC--CC--GGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 134954 | 0.7 | 0.783278 |
Target: 5'- -gGCGGGGGCG-GGGGCGGGggccCCGGGGg -3' miRNA: 3'- uaCGUUUUCGCgUUCCGCCC----GGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 134910 | 0.71 | 0.69119 |
Target: 5'- -gGCGucGGGGCGCGAGGCccGGGCUcgGGc -3' miRNA: 3'- uaCGU--UUUCGCGUUCCG--CCCGGuuUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 134777 | 0.77 | 0.369079 |
Target: 5'- -cGCGGc-GCGCGGGGCGGGCCccGGg -3' miRNA: 3'- uaCGUUuuCGCGUUCCGCCCGGuuUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 134662 | 0.7 | 0.753551 |
Target: 5'- -cGCGGAGGCGC-GGGCacccaugacGGcGCCGAAGc -3' miRNA: 3'- uaCGUUUUCGCGuUCCG---------CC-CGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 134624 | 0.71 | 0.712308 |
Target: 5'- -aGUAGAacAGCGUgggcugGGGGCGGGCCGGc- -3' miRNA: 3'- uaCGUUU--UCGCG------UUCCGCCCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 134493 | 0.68 | 0.846925 |
Target: 5'- aGUGCAcgGGUGUAGuGUGGGCCGu-- -3' miRNA: 3'- -UACGUuuUCGCGUUcCGCCCGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 134456 | 0.67 | 0.913051 |
Target: 5'- uUGCGGcAGgGCAagauggcauAGGCGcGGCCAAc- -3' miRNA: 3'- uACGUUuUCgCGU---------UCCGC-CCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 134200 | 0.73 | 0.562651 |
Target: 5'- cGUGgAGcGGCGCGc-GCGGGCCGAGGg -3' miRNA: 3'- -UACgUUuUCGCGUucCGCCCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 134157 | 0.67 | 0.886118 |
Target: 5'- -gGCAGAAgGUGCGu-GCGGGCCGGc- -3' miRNA: 3'- uaCGUUUU-CGCGUucCGCCCGGUUuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 133794 | 0.68 | 0.871145 |
Target: 5'- -cGCAAGGacauggccGCGCAGGGCGcGGCgCuGGGg -3' miRNA: 3'- uaCGUUUU--------CGCGUUCCGC-CCG-GuUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 133704 | 0.74 | 0.552093 |
Target: 5'- aAUGCAcccGAGCGCAAauagugccuGGCGGGCgCGGGGc -3' miRNA: 3'- -UACGUu--UUCGCGUU---------CCGCCCG-GUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 133622 | 0.71 | 0.701782 |
Target: 5'- -gGCAcAAGCGCGcgcGGGgggaacacaaCGGGCCAAGGc -3' miRNA: 3'- uaCGUuUUCGCGU---UCC----------GCCCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 133587 | 0.71 | 0.722759 |
Target: 5'- -gGCGcgGGCGCGcuaucgggcGGGCGGGCUuGGGc -3' miRNA: 3'- uaCGUuuUCGCGU---------UCCGCCCGGuUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 133173 | 0.67 | 0.886118 |
Target: 5'- -cGgGGAGGCGCu-GGCGGcGCCGc-- -3' miRNA: 3'- uaCgUUUUCGCGuuCCGCC-CGGUuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 133172 | 0.68 | 0.871145 |
Target: 5'- cUGCuaccuGCGCGGGcGCGGGCUg--- -3' miRNA: 3'- uACGuuuu-CGCGUUC-CGCCCGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 132633 | 0.72 | 0.648384 |
Target: 5'- -gGCAgcAAAGCGCGAGGCGGcCCu--- -3' miRNA: 3'- uaCGU--UUUCGCGUUCCGCCcGGuuuc -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 132613 | 0.74 | 0.524942 |
Target: 5'- -gGCGGGAGCGCcgccggguccgagggAAGGaagaaGGGCCGAGGa -3' miRNA: 3'- uaCGUUUUCGCG---------------UUCCg----CCCGGUUUC- -5' |
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6486 | 3' | -53.4 | NC_001847.1 | + | 132572 | 0.66 | 0.935802 |
Target: 5'- -gGCGGccGCGC-AGGCGcccgcGCCGAAGa -3' miRNA: 3'- uaCGUUuuCGCGuUCCGCc----CGGUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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