miRNA display CGI


Results 1 - 20 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 102069 0.73 0.583921
Target:  5'- -gGCAGcAAGgGCAGGcGCGGGCCGc-- -3'
miRNA:   3'- uaCGUU-UUCgCGUUC-CGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 102673 0.75 0.500341
Target:  5'- -cGCGAGGGCgGgGGGGCGGGgCGGGGg -3'
miRNA:   3'- uaCGUUUUCG-CgUUCCGCCCgGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 130514 0.74 0.510532
Target:  5'- -cGCGcGAGCGCc-GGCGGGCCGc-- -3'
miRNA:   3'- uaCGUuUUCGCGuuCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 100884 0.74 0.520808
Target:  5'- -gGCAGGGGCGCGGccGGCGGGagaCGGGGu -3'
miRNA:   3'- uaCGUUUUCGCGUU--CCGCCCg--GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 108479 0.74 0.520808
Target:  5'- -cGCccAGGCGCgAAGGUGGGCCGGc- -3'
miRNA:   3'- uaCGuuUUCGCG-UUCCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 132613 0.74 0.524942
Target:  5'- -gGCGGGAGCGCcgccggguccgagggAAGGaagaaGGGCCGAGGa -3'
miRNA:   3'- uaCGUUUUCGCG---------------UUCCg----CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 40377 0.74 0.531165
Target:  5'- -aGCGGAAGCGgGGGGCGacggccccGGCCAAGa -3'
miRNA:   3'- uaCGUUUUCGCgUUCCGC--------CCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 81219 0.74 0.531165
Target:  5'- gAUGCAGGcucGGCgGCAGcggcGGCGGGCCAGGc -3'
miRNA:   3'- -UACGUUU---UCG-CGUU----CCGCCCGGUUUc -5'
6486 3' -53.4 NC_001847.1 + 75358 0.73 0.573263
Target:  5'- -gGUAAAAGCGCGucucGGCGGGCau-GGg -3'
miRNA:   3'- uaCGUUUUCGCGUu---CCGCCCGguuUC- -5'
6486 3' -53.4 NC_001847.1 + 86606 0.75 0.49024
Target:  5'- -cGCGGcuccGGGCGCGccucgAGGCGGGCCAc-- -3'
miRNA:   3'- uaCGUU----UUCGCGU-----UCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 34173 0.75 0.460534
Target:  5'- -gGCuGAGGCGCu--GCGGGCCGGGGg -3'
miRNA:   3'- uaCGuUUUCGCGuucCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 104352 0.76 0.441268
Target:  5'- -cGCGAAGGCGCc---CGGGCCGAAGa -3'
miRNA:   3'- uaCGUUUUCGCGuuccGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 3965 0.81 0.238114
Target:  5'- -aGCGccAGCGCGAGGUGGGCCGu-- -3'
miRNA:   3'- uaCGUuuUCGCGUUCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 83256 0.8 0.256895
Target:  5'- -gGcCGAAAGCGCGgcggGGGCGGGCgCAGAGg -3'
miRNA:   3'- uaC-GUUUUCGCGU----UCCGCCCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 129303 0.79 0.298066
Target:  5'- -gGCGGGccuGGUGCAAGGCGGGCCu--- -3'
miRNA:   3'- uaCGUUU---UCGCGUUCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 30438 0.77 0.369079
Target:  5'- -cGCGGAGGCGCcggggcugcacGAGGUGGGCCGc-- -3'
miRNA:   3'- uaCGUUUUCGCG-----------UUCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 134777 0.77 0.369079
Target:  5'- -cGCGGc-GCGCGGGGCGGGCCccGGg -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGCCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 33529 0.77 0.386355
Target:  5'- -cGCGGAGGCGCcGGGCgcgGGcGCCGAAGa -3'
miRNA:   3'- uaCGUUUUCGCGuUCCG---CC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 7721 0.76 0.422467
Target:  5'- -gGCAuucAGGCGCAGGGCgcGGGCgCGGAGg -3'
miRNA:   3'- uaCGUu--UUCGCGUUCCG--CCCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 2719 0.76 0.426189
Target:  5'- uUGCGAaccugccccaccacgGAGCGCAGGGCGGGagcgagCGAGGg -3'
miRNA:   3'- uACGUU---------------UUCGCGUUCCGCCCg-----GUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.