miRNA display CGI


Results 1 - 20 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 82454 0.66 0.94083
Target:  5'- -gGCuccAGGCGC--GGCGGGCCc--- -3'
miRNA:   3'- uaCGuu-UUCGCGuuCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 486 0.66 0.935802
Target:  5'- -aGCGGcGGCgGCGGGGCGGccgcgcGCCAAc- -3'
miRNA:   3'- uaCGUUuUCG-CGUUCCGCC------CGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 103004 0.66 0.930511
Target:  5'- cGUGCGcgGGCGC--GGCGGcGCCc--- -3'
miRNA:   3'- -UACGUuuUCGCGuuCCGCC-CGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 25459 1.06 0.005067
Target:  5'- aAUGCAAAAGCGCAAGGCGGGCCAAAGc -3'
miRNA:   3'- -UACGUUUUCGCGUUCCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 3818 0.66 0.94083
Target:  5'- -gGCGGcGGCGCGcuGcCGGGCCAc-- -3'
miRNA:   3'- uaCGUUuUCGCGUucC-GCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 81878 0.66 0.940339
Target:  5'- -cGCcuGGGCGCGcagcgccccgccgAGGCGGcGCCGcAGc -3'
miRNA:   3'- uaCGuuUUCGCGU-------------UCCGCC-CGGUuUC- -5'
6486 3' -53.4 NC_001847.1 + 52102 0.66 0.935802
Target:  5'- -cGCGGcccAAGCGCAcuAGcggccGCGGGCCGGc- -3'
miRNA:   3'- uaCGUU---UUCGCGU--UC-----CGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 42492 0.66 0.935802
Target:  5'- -cGCcGAAGCGCu--GCGGGCgAAAc -3'
miRNA:   3'- uaCGuUUUCGCGuucCGCCCGgUUUc -5'
6486 3' -53.4 NC_001847.1 + 131960 0.66 0.935802
Target:  5'- -gGCGAcGGCgGCGAGaGCGGGaUCAGAa -3'
miRNA:   3'- uaCGUUuUCG-CGUUC-CGCCC-GGUUUc -5'
6486 3' -53.4 NC_001847.1 + 3260 0.66 0.935802
Target:  5'- -gGCAGGGGCGCcGGcgccGCGcGGCCGGc- -3'
miRNA:   3'- uaCGUUUUCGCGuUC----CGC-CCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 54354 0.66 0.935802
Target:  5'- -cGUAAAGGCGUguauaAAGGCcGGGUCGu-- -3'
miRNA:   3'- uaCGUUUUCGCG-----UUCCG-CCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 132572 0.66 0.935802
Target:  5'- -gGCGGccGCGC-AGGCGcccgcGCCGAAGa -3'
miRNA:   3'- uaCGUUuuCGCGuUCCGCc----CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 22404 0.66 0.94083
Target:  5'- -cGCGGcGAGCGUgcucguccgcgGGGGCGgGGCCcGAGa -3'
miRNA:   3'- uaCGUU-UUCGCG-----------UUCCGC-CCGGuUUC- -5'
6486 3' -53.4 NC_001847.1 + 109268 0.66 0.935802
Target:  5'- -gGCAGGGGCgggcugcaaGCGAGGgGGGCgAgcAAGa -3'
miRNA:   3'- uaCGUUUUCG---------CGUUCCgCCCGgU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 21558 0.66 0.94083
Target:  5'- uAUGaCAAGGGC-CGGGGagaGGGCgGGAGa -3'
miRNA:   3'- -UAC-GUUUUCGcGUUCCg--CCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 37124 0.66 0.935802
Target:  5'- cAUGCucuGGGGCGCGcacgcccaGCGGGCCuuuGGGg -3'
miRNA:   3'- -UACGu--UUUCGCGUuc------CGCCCGGu--UUC- -5'
6486 3' -53.4 NC_001847.1 + 32941 0.66 0.935802
Target:  5'- -gGCGGcGGgGCcGGGgGGGCgGAGGa -3'
miRNA:   3'- uaCGUUuUCgCGuUCCgCCCGgUUUC- -5'
6486 3' -53.4 NC_001847.1 + 39419 0.66 0.930511
Target:  5'- --cCGAAAGCaGCGAGGgGGGCgCGuGGg -3'
miRNA:   3'- uacGUUUUCG-CGUUCCgCCCG-GUuUC- -5'
6486 3' -53.4 NC_001847.1 + 8129 0.66 0.94083
Target:  5'- -cGC---GGgGC-GGGCGGGCCGAc- -3'
miRNA:   3'- uaCGuuuUCgCGuUCCGCCCGGUUuc -5'
6486 3' -53.4 NC_001847.1 + 123099 0.66 0.939349
Target:  5'- -cGCAGc-GCGCAGGGCGuccagcgcuccgccGGgCAGAGg -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGC--------------CCgGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.