Results 21 - 40 of 371 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 32322 | 0.66 | 0.930511 |
Target: 5'- -cGCAGGGGgccCGCGcGGCGcGGCgCGGAGg -3' miRNA: 3'- uaCGUUUUC---GCGUuCCGC-CCG-GUUUC- -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 103004 | 0.66 | 0.930511 |
Target: 5'- cGUGCGcgGGCGC--GGCGGcGCCc--- -3' miRNA: 3'- -UACGUuuUCGCGuuCCGCC-CGGuuuc -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 132572 | 0.66 | 0.935802 |
Target: 5'- -gGCGGccGCGC-AGGCGcccgcGCCGAAGa -3' miRNA: 3'- uaCGUUuuCGCGuUCCGCc----CGGUUUC- -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 8129 | 0.66 | 0.94083 |
Target: 5'- -cGC---GGgGC-GGGCGGGCCGAc- -3' miRNA: 3'- uaCGuuuUCgCGuUCCGCCCGGUUuc -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 71518 | 0.66 | 0.919135 |
Target: 5'- -cGCGGAGGCaGUA--GCGGGCgAAGGg -3' miRNA: 3'- uaCGUUUUCG-CGUucCGCCCGgUUUC- -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 95342 | 0.66 | 0.924955 |
Target: 5'- -cGCAgGGGGCGCAgccagGGGagcgGGGCCAGGc -3' miRNA: 3'- uaCGU-UUUCGCGU-----UCCg---CCCGGUUUc -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 486 | 0.66 | 0.935802 |
Target: 5'- -aGCGGcGGCgGCGGGGCGGccgcgcGCCAAc- -3' miRNA: 3'- uaCGUUuUCG-CGUUCCGCC------CGGUUuc -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 21558 | 0.66 | 0.94083 |
Target: 5'- uAUGaCAAGGGC-CGGGGagaGGGCgGGAGa -3' miRNA: 3'- -UAC-GUUUUCGcGUUCCg--CCCGgUUUC- -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 112045 | 0.66 | 0.924955 |
Target: 5'- -cGCGGuGGCGCGc-GCGGGCUAcguaGAGg -3' miRNA: 3'- uaCGUUuUCGCGUucCGCCCGGU----UUC- -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 22404 | 0.66 | 0.94083 |
Target: 5'- -cGCGGcGAGCGUgcucguccgcgGGGGCGgGGCCcGAGa -3' miRNA: 3'- uaCGUU-UUCGCG-----------UUCCGC-CCGGuUUC- -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 39419 | 0.66 | 0.930511 |
Target: 5'- --cCGAAAGCaGCGAGGgGGGCgCGuGGg -3' miRNA: 3'- uacGUUUUCG-CGUUCCgCCCG-GUuUC- -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 29638 | 0.66 | 0.930511 |
Target: 5'- -gGCcGGGGCGCcgcGGGCGGacCCGGAGg -3' miRNA: 3'- uaCGuUUUCGCGu--UCCGCCc-GGUUUC- -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 109268 | 0.66 | 0.935802 |
Target: 5'- -gGCAGGGGCgggcugcaaGCGAGGgGGGCgAgcAAGa -3' miRNA: 3'- uaCGUUUUCG---------CGUUCCgCCCGgU--UUC- -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 131960 | 0.66 | 0.935802 |
Target: 5'- -gGCGAcGGCgGCGAGaGCGGGaUCAGAa -3' miRNA: 3'- uaCGUUuUCG-CGUUC-CGCCC-GGUUUc -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 52102 | 0.66 | 0.935802 |
Target: 5'- -cGCGGcccAAGCGCAcuAGcggccGCGGGCCGGc- -3' miRNA: 3'- uaCGUU---UUCGCGU--UC-----CGCCCGGUUuc -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 3818 | 0.66 | 0.94083 |
Target: 5'- -gGCGGcGGCGCGcuGcCGGGCCAc-- -3' miRNA: 3'- uaCGUUuUCGCGUucC-GCCCGGUuuc -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 107700 | 0.66 | 0.919135 |
Target: 5'- cUGCGGuuggcGGCGCucgcGGGCGGGCa---- -3' miRNA: 3'- uACGUUu----UCGCGu---UCCGCCCGguuuc -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 53590 | 0.66 | 0.919135 |
Target: 5'- -cGCAGcuGCGCGGGGCcGGCgAGc- -3' miRNA: 3'- uaCGUUuuCGCGUUCCGcCCGgUUuc -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 90727 | 0.66 | 0.924385 |
Target: 5'- -cGCGAAcgcagccgcucgcGGCGCGuGGcCGGGCCccGGg -3' miRNA: 3'- uaCGUUU-------------UCGCGUuCC-GCCCGGuuUC- -5' |
|||||||
6486 | 3' | -53.4 | NC_001847.1 | + | 94480 | 0.66 | 0.924955 |
Target: 5'- uGUGCGgcaaaguacagAAGGcCGCGAGGCGcGGCgGAc- -3' miRNA: 3'- -UACGU-----------UUUC-GCGUUCCGC-CCGgUUuc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home