miRNA display CGI


Results 1 - 20 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6486 3' -53.4 NC_001847.1 + 128272 1.06 0.005067
Target:  5'- aAUGCAAAAGCGCAAGGCGGGCCAAAGc -3'
miRNA:   3'- -UACGUUUUCGCGUUCCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 25459 1.06 0.005067
Target:  5'- aAUGCAAAAGCGCAAGGCGGGCCAAAGc -3'
miRNA:   3'- -UACGUUUUCGCGUUCCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 3965 0.81 0.238114
Target:  5'- -aGCGccAGCGCGAGGUGGGCCGu-- -3'
miRNA:   3'- uaCGUuuUCGCGUUCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 83256 0.8 0.256895
Target:  5'- -gGcCGAAAGCGCGgcggGGGCGGGCgCAGAGg -3'
miRNA:   3'- uaC-GUUUUCGCGU----UCCGCCCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 68849 0.79 0.2831
Target:  5'- -aGCucGGGCGCGAGGCggcggcgugcgccGGGCCGAAGa -3'
miRNA:   3'- uaCGuuUUCGCGUUCCG-------------CCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 26490 0.79 0.298066
Target:  5'- -gGCGGGccuGGUGCAAGGCGGGCCu--- -3'
miRNA:   3'- uaCGUUU---UCGCGUUCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 129303 0.79 0.298066
Target:  5'- -gGCGGGccuGGUGCAAGGCGGGCCu--- -3'
miRNA:   3'- uaCGUUU---UCGCGUUCCGCCCGGuuuc -5'
6486 3' -53.4 NC_001847.1 + 134777 0.77 0.369079
Target:  5'- -cGCGGc-GCGCGGGGCGGGCCccGGg -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGCCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 31964 0.77 0.369079
Target:  5'- -cGCGGc-GCGCGGGGCGGGCCccGGg -3'
miRNA:   3'- uaCGUUuuCGCGUUCCGCCCGGuuUC- -5'
6486 3' -53.4 NC_001847.1 + 30438 0.77 0.369079
Target:  5'- -cGCGGAGGCGCcggggcugcacGAGGUGGGCCGc-- -3'
miRNA:   3'- uaCGUUUUCGCG-----------UUCCGCCCGGUuuc -5'
6486 3' -53.4 NC_001847.1 + 76806 0.77 0.37765
Target:  5'- -cGCAAAGGCGgGGGGaGGGCCAcaGAGa -3'
miRNA:   3'- uaCGUUUUCGCgUUCCgCCCGGU--UUC- -5'
6486 3' -53.4 NC_001847.1 + 33529 0.77 0.386355
Target:  5'- -cGCGGAGGCGCcGGGCgcgGGcGCCGAAGa -3'
miRNA:   3'- uaCGUUUUCGCGuUCCG---CC-CGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 7721 0.76 0.422467
Target:  5'- -gGCAuucAGGCGCAGGGCgcGGGCgCGGAGg -3'
miRNA:   3'- uaCGUu--UUCGCGUUCCG--CCCG-GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 2719 0.76 0.426189
Target:  5'- uUGCGAaccugccccaccacgGAGCGCAGGGCGGGagcgagCGAGGg -3'
miRNA:   3'- uACGUU---------------UUCGCGUUCCGCCCg-----GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 75480 0.76 0.441268
Target:  5'- -gGCcAGAGCGCAcGGGCGGGCgCGAGc -3'
miRNA:   3'- uaCGuUUUCGCGU-UCCGCCCG-GUUUc -5'
6486 3' -53.4 NC_001847.1 + 1539 0.76 0.441268
Target:  5'- -cGCGAAGGCGCc---CGGGCCGAAGa -3'
miRNA:   3'- uaCGUUUUCGCGuuccGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 104352 0.76 0.441268
Target:  5'- -cGCGAAGGCGCc---CGGGCCGAAGa -3'
miRNA:   3'- uaCGUUUUCGCGuuccGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 45728 0.76 0.450845
Target:  5'- cGUGCA----CGCcgAAGGCGGGCCAGAGc -3'
miRNA:   3'- -UACGUuuucGCG--UUCCGCCCGGUUUC- -5'
6486 3' -53.4 NC_001847.1 + 55703 0.75 0.460534
Target:  5'- cGUGCAAAcGGCGCGAGG-GGGCgaCAGAGc -3'
miRNA:   3'- -UACGUUU-UCGCGUUCCgCCCG--GUUUC- -5'
6486 3' -53.4 NC_001847.1 + 34173 0.75 0.460534
Target:  5'- -gGCuGAGGCGCu--GCGGGCCGGGGg -3'
miRNA:   3'- uaCGuUUUCGCGuucCGCCCGGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.